RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 VCPKMTQ9H867 229 aa27.41■■□□□ 1.98
PTPN4-208ENST00000460289 MAPK4P31152 587 aa27.4■■□□□ 1.98
PTPN4-208ENST00000460289 UBXN2AP68543 259 aa27.4■■□□□ 1.98
PTPN4-208ENST00000460289 ATP2B2Q01814 1243 aa27.4■■□□□ 1.98
PTPN4-208ENST00000460289 Q3C1V9 767 aa27.4■■□□□ 1.98
PTPN4-208ENST00000460289 CCDC129Q6ZRS4 1044 aa27.4■■□□□ 1.98
PTPN4-208ENST00000460289 CLEC10AQ8IUN9 316 aa27.4■■□□□ 1.98
PTPN4-208ENST00000460289 CENPFP49454 3210 aa27.39■■□□□ 1.98
PTPN4-208ENST00000460289 MYCP01106 439 aaPredicted RBP27.39■■□□□ 1.98
PTPN4-208ENST00000460289 CCNA1P78396 465 aa27.39■■□□□ 1.98
PTPN4-208ENST00000460289 PPARAQ07869 468 aa27.39■■□□□ 1.98
PTPN4-208ENST00000460289 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.39■■□□□ 1.98
PTPN4-208ENST00000460289 TANGO6Q9C0B7 1094 aa27.39■■□□□ 1.98
PTPN4-208ENST00000460289 PEX10O60683 326 aa27.38■■□□□ 1.97
PTPN4-208ENST00000460289 POTEEQ6S8J3 1075 aa27.38■■□□□ 1.97
PTPN4-208ENST00000460289 FAM227BQ96M60 508 aa27.38■■□□□ 1.97
PTPN4-208ENST00000460289 GOPCQ9HD26 462 aa27.38■■□□□ 1.97
PTPN4-208ENST00000460289 GJD2Q9UKL4 321 aa27.38■■□□□ 1.97
PTPN4-208ENST00000460289 SPDYE16A6NNV3 312 aaPredicted RBP27.37■■□□□ 1.97
PTPN4-208ENST00000460289 PRDM1O75626 825 aa27.37■■□□□ 1.97
PTPN4-208ENST00000460289 SPICE1Q8N0Z3 855 aa27.37■■□□□ 1.97
PTPN4-208ENST00000460289 A0A0D9SFI3 127 aa27.36■■□□□ 1.97
PTPN4-208ENST00000460289 WDR46O15213 610 aaKnown RBP27.36■■□□□ 1.97
PTPN4-208ENST00000460289 NMIQ13287 307 aaPredicted RBP27.36■■□□□ 1.97
PTPN4-208ENST00000460289 ALX1Q15699 326 aa27.36■■□□□ 1.97
PTPN4-208ENST00000460289 KIAA1755Q5JYT7 1200 aa27.36■■□□□ 1.97
PTPN4-208ENST00000460289 NYAP2Q9P242 653 aa27.36■■□□□ 1.97
PTPN4-208ENST00000460289 FOXP2O15409 715 aa27.35■■□□□ 1.97
PTPN4-208ENST00000460289 CNMDO75829 334 aa27.35■■□□□ 1.97
PTPN4-208ENST00000460289 EN2P19622 333 aaPredicted RBP27.35■■□□□ 1.97
PTPN4-208ENST00000460289 SDSP20132 328 aa27.35■■□□□ 1.97
PTPN4-208ENST00000460289 MTFR1Q15390 333 aa27.35■■□□□ 1.97
PTPN4-208ENST00000460289 SOCS4Q8WXH5 440 aa27.35■■□□□ 1.97
PTPN4-208ENST00000460289 NUDT12Q9BQG2 462 aa27.35■■□□□ 1.97
PTPN4-208ENST00000460289 CWC22Q9HCG8 908 aaKnown RBP27.35■■□□□ 1.97
PTPN4-208ENST00000460289 KIAA0100Q14667 2235 aaKnown RBP27.35■■□□□ 1.97
PTPN4-208ENST00000460289 ELNP15502 786 aa27.34■■□□□ 1.97
PTPN4-208ENST00000460289 MFAP1P55081 439 aaKnown RBP27.34■■□□□ 1.97
PTPN4-208ENST00000460289 VPS53Q5VIR6 699 aa27.34■■□□□ 1.97
PTPN4-208ENST00000460289 PLEKHH3Q7Z736 793 aa27.34■■□□□ 1.97
PTPN4-208ENST00000460289 PORCNQ9H237 461 aa27.34■■□□□ 1.97
PTPN4-208ENST00000460289 HIP1O00291 1037 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 FLOT1O75955 427 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 TSPY3P0CV98 308 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 TSPY8P0CW00 308 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 CCL5P13501 91 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 DSG3P32926 999 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 GPR142Q7Z601 462 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 MB21D1Q8N884 522 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 RNF208Q9H0X6 261 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 BTBD7Q9P203 1132 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 CLIP2Q9UDT6 1046 aa27.33■■□□□ 1.97
PTPN4-208ENST00000460289 DOCK3Q8IZD9 2030 aa27.33■■□□□ 1.96
PTPN4-208ENST00000460289 IGKV6D-41A0A0C4DH26 115 aa27.32■■□□□ 1.96
PTPN4-208ENST00000460289 RAD21O60216 631 aa27.32■■□□□ 1.96
PTPN4-208ENST00000460289 INHAP05111 366 aa27.32■■□□□ 1.96
PTPN4-208ENST00000460289 NEDD1Q8NHV4 660 aa27.32■■□□□ 1.96
PTPN4-208ENST00000460289 NKX2-3Q8TAU0 364 aa27.32■■□□□ 1.96
PTPN4-208ENST00000460289 ANAPC4Q9UJX5 808 aa27.32■■□□□ 1.96
PTPN4-208ENST00000460289 RBBP6Q7Z6E9 1792 aaKnown RBP27.32■■□□□ 1.96
PTPN4-208ENST00000460289 HSPD1P10809 573 aaKnown RBP27.31■■□□□ 1.96
PTPN4-208ENST00000460289 XRCC5P13010 732 aaKnown RBP27.31■■□□□ 1.96
PTPN4-208ENST00000460289 TFAP4Q01664 338 aa27.31■■□□□ 1.96
PTPN4-208ENST00000460289 MKL1Q969V6 931 aa27.31■■□□□ 1.96
PTPN4-208ENST00000460289 MTMR4Q9NYA4 1195 aa27.31■■□□□ 1.96
PTPN4-208ENST00000460289 SYNPO2Q9UMS6 1093 aa27.31■■□□□ 1.96
PTPN4-208ENST00000460289 CCDC171Q6TFL3 1326 aa27.31■■□□□ 1.96
PTPN4-208ENST00000460289 FGAP02671 866 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 GJB1P08034 283 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 CYP2B6P20813 491 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 CTDSPL2Q05D32 466 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 PPP4R3BQ5MIZ7 849 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 TRMT44Q8IYL2 757 aaKnown RBP27.3■■□□□ 1.96
PTPN4-208ENST00000460289 CEP95Q96GE4 821 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 DIAPH3Q9NSV4 1193 aa27.3■■□□□ 1.96
PTPN4-208ENST00000460289 F5H6K3 240 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 TTLL1O95922 423 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 HMGCRP04035 888 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 RGS2P41220 211 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 KLRC3Q07444 240 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 FAM47AQ5JRC9 791 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 MORN1Q5T089 497 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 WDR78Q5VTH9 848 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 ZNF589Q86UQ0 364 aaPredicted RBP27.29■■□□□ 1.96
PTPN4-208ENST00000460289 IVNS1ABPQ9Y6Y0 642 aa27.29■■□□□ 1.96
PTPN4-208ENST00000460289 GREB1LQ9C091 1923 aaPredicted RBP27.28■■□□□ 1.96
PTPN4-208ENST00000460289 PLIN4Q96Q06 1357 aa27.28■■□□□ 1.96
PTPN4-208ENST00000460289 ZMYM6O95789 1325 aa27.28■■□□□ 1.96
PTPN4-208ENST00000460289 PDE4AP27815 886 aa27.28■■□□□ 1.96
PTPN4-208ENST00000460289 CWC27Q6UX04 472 aaKnown RBP27.28■■□□□ 1.96
PTPN4-208ENST00000460289 USP6NLQ92738 828 aa27.28■■□□□ 1.96
PTPN4-208ENST00000460289 SPATC1LQ9H0A9 340 aa27.28■■□□□ 1.96
PTPN4-208ENST00000460289 UNC93B1Q9H1C4 597 aa27.28■■□□□ 1.96
PTPN4-208ENST00000460289 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.28■■□□□ 1.96
PTPN4-208ENST00000460289 GJA8P48165 433 aa27.27■■□□□ 1.96
PTPN4-208ENST00000460289 FAM83BQ5T0W9 1011 aa27.27■■□□□ 1.96
PTPN4-208ENST00000460289 ATG4CQ96DT6 458 aa27.27■■□□□ 1.96
PTPN4-208ENST00000460289 MOV10L1Q9BXT6 1211 aaKnown RBP27.27■■□□□ 1.96
PTPN4-208ENST00000460289 ADAMTS5Q9UNA0 930 aa27.27■■□□□ 1.96
PTPN4-208ENST00000460289 SLC15A5A6NIM6 579 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms