RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 A0A1W2PRG0 241 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 KBTBD13C9JR72 458 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 IPO8O15397 1037 aaKnown RBP17.57■□□□□ 0.4
HMGN1-208ENST00000443046 USP5P45974 858 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 PLCD1P51178 756 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 ATP8B2P98198 1209 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 GABPAQ06546 454 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 COG2Q14746 738 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 TRIM60Q495X7 471 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 SH3RF1Q7Z6J0 888 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 DPP9Q86TI2 863 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 CABP5Q9NP86 173 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 PRDM6Q9NQX0 595 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 HOXC10Q9NYD6 342 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 TLR7Q9NYK1 1049 aaKnown RBP17.57■□□□□ 0.4
HMGN1-208ENST00000443046 NOP58Q9Y2X3 529 aaKnown RBP17.57■□□□□ 0.4
HMGN1-208ENST00000443046 SMCHD1A6NHR9 2005 aa17.57■□□□□ 0.4
HMGN1-208ENST00000443046 LRRC41Q15345 812 aa17.56■□□□□ 0.4
HMGN1-208ENST00000443046 MAGEB6Q8N7X4 407 aa17.56■□□□□ 0.4
HMGN1-208ENST00000443046 MYLIPQ8WY64 445 aa17.56■□□□□ 0.4
HMGN1-208ENST00000443046 RIOK1Q9BRS2 568 aaKnown RBP17.56■□□□□ 0.4
HMGN1-208ENST00000443046 SPATC1LQ9H0A9 340 aa17.56■□□□□ 0.4
HMGN1-208ENST00000443046 ZNFX1Q9P2E3 1918 aaKnown RBP17.55■□□□□ 0.4
HMGN1-208ENST00000443046 IDH1O75874 414 aaKnown RBP17.55■□□□□ 0.4
HMGN1-208ENST00000443046 ERCC3P19447 782 aa17.55■□□□□ 0.4
HMGN1-208ENST00000443046 ADCYAP1R1P41586 468 aa17.55■□□□□ 0.4
HMGN1-208ENST00000443046 SEPT2Q15019 361 aa17.55■□□□□ 0.4
HMGN1-208ENST00000443046 ANO1Q5XXA6 986 aa17.55■□□□□ 0.4
HMGN1-208ENST00000443046 ABRAQ8N0Z2 381 aa17.55■□□□□ 0.4
HMGN1-208ENST00000443046 EAF2Q96CJ1 260 aaPredicted RBP17.55■□□□□ 0.4
HMGN1-208ENST00000443046 PRDM5Q9NQX1 630 aaPredicted RBP17.55■□□□□ 0.4
HMGN1-208ENST00000443046 CHD7Q9P2D1 2997 aa17.55■□□□□ 0.4
HMGN1-208ENST00000443046 TMEM265A0A087WTH1 108 aa17.54■□□□□ 0.4
HMGN1-208ENST00000443046 SURF6O75683 361 aaKnown RBP17.54■□□□□ 0.4
HMGN1-208ENST00000443046 ITGB8P26012 769 aa17.54■□□□□ 0.4
HMGN1-208ENST00000443046 PRAMEF19Q5SWL8 479 aa17.54■□□□□ 0.4
HMGN1-208ENST00000443046 ANTXR1Q9H6X2 564 aa17.54■□□□□ 0.4
HMGN1-208ENST00000443046 REV3LO60673 3130 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 BCAR3O75815 825 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 DSG3P32926 999 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 TLE2Q04725 743 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 OS9Q13438 667 aaPredicted RBP17.53■□□□□ 0.4
HMGN1-208ENST00000443046 FAM47AQ5JRC9 791 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 KIAA1755Q5JYT7 1200 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 MB21D1Q8N884 522 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 CLUAP1Q96AJ1 413 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 MAML3Q96JK9 1138 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 CCDC8Q9H0W5 538 aaPredicted RBP17.53■□□□□ 0.4
HMGN1-208ENST00000443046 MROH8Q9H579 483 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 PHF24Q9UPV7 400 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 PARP14Q460N5 1801 aa17.53■□□□□ 0.4
HMGN1-208ENST00000443046 EPHB4P54760 987 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 EVX2Q03828 476 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 SIAH1Q8IUQ4 282 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 TMEM57Q8N5G2 664 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 FERMT2Q96AC1 680 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 SLC5A4Q9NY91 659 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 NRBP1Q9UHY1 535 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 TACC3Q9Y6A5 838 aa17.52■□□□□ 0.4
HMGN1-208ENST00000443046 XIRP2A4UGR9 3374 aa17.51■□□□□ 0.39
HMGN1-208ENST00000443046 KIAA0355O15063 1070 aa17.51■□□□□ 0.39
HMGN1-208ENST00000443046 FOSL2P15408 326 aa17.51■□□□□ 0.39
HMGN1-208ENST00000443046 MAP3K12Q12852 859 aa17.51■□□□□ 0.39
HMGN1-208ENST00000443046 NAV1Q8NEY1 1877 aa17.51■□□□□ 0.39
HMGN1-208ENST00000443046 SYMPKQ92797 1274 aaKnown RBP17.5■□□□□ 0.39
HMGN1-208ENST00000443046 FRAT1Q92837 279 aaPredicted RBP17.5■□□□□ 0.39
HMGN1-208ENST00000443046 TANGO6Q9C0B7 1094 aa17.5■□□□□ 0.39
HMGN1-208ENST00000443046 ADAMTS5Q9UNA0 930 aa17.5■□□□□ 0.39
HMGN1-208ENST00000443046 ROBO3Q96MS0 1386 aa17.5■□□□□ 0.39
HMGN1-208ENST00000443046 POLR3DP05423 398 aaPredicted RBP17.49■□□□□ 0.39
HMGN1-208ENST00000443046 CLTBP09497 229 aa17.49■□□□□ 0.39
HMGN1-208ENST00000443046 BDP1A6H8Y1 2624 aa17.49■□□□□ 0.39
HMGN1-208ENST00000443046 MAGEB6P1A0A0J9YX57 407 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 MYCNP04198 464 aaPredicted RBP17.48■□□□□ 0.39
HMGN1-208ENST00000443046 FCER1AP12319 257 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 GRIN2CQ14957 1233 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 TMEM132BQ14DG7 1078 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 TMEM179Q6ZVK1 233 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 NCAPG2Q86XI2 1143 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 ATG4CQ96DT6 458 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 RNPC3Q96LT9 517 aaKnown RBP17.48■□□□□ 0.39
HMGN1-208ENST00000443046 XPNPEP3Q9NQH7 507 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 TMX2Q9Y320 296 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 PLXNA1Q9UIW2 1896 aa17.48■□□□□ 0.39
HMGN1-208ENST00000443046 COL11A1P12107 1806 aaPredicted RBP17.47■□□□□ 0.39
HMGN1-208ENST00000443046 NCOR1O75376 2440 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 A0A1W2PQ45 241 aaPredicted RBP17.47■□□□□ 0.39
HMGN1-208ENST00000443046 A0A1W2PQY0 241 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 MPHOSPH10O00566 681 aaKnown RBP17.47■□□□□ 0.39
HMGN1-208ENST00000443046 SLC25A27O95847 323 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 RARBP10826 455 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 ZNF792Q3KQV3 632 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 ANKRD33Q7Z3H0 272 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 USP38Q8NB14 1042 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 TOX2Q96NM4 488 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 TINF2Q9BSI4 451 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 C1orf115Q9H7X2 142 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 DCP1AQ9NPI6 582 aaPredicted RBP17.47■□□□□ 0.39
HMGN1-208ENST00000443046 MCM9Q9NXL9 1143 aa17.47■□□□□ 0.39
HMGN1-208ENST00000443046 DIS3Q9Y2L1 958 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms