RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 C6orf50Q9HD87 102 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 KCNJ14Q9UNX9 436 aa6.92□□□□□ -1.3
VPS50-205ENST00000441602 COL2A1P02458 1487 aaPredicted RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 CCDC194A0A1B0GVG4 234 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 BTBD18B2RXH4 712 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 KLRF2D3W0D1 207 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 VIL1P09327 827 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 LIG1P18858 919 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 CMA1P23946 247 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 RPS12P25398 132 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 GNA11P29992 359 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 EIF6P56537 245 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 ATP2B2Q01814 1243 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 GABPAQ06546 454 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 CERKLQ49MI3 558 aaPredicted RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 FKBP1CQ5VVH2 108 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 NKX2-3Q8TAU0 364 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 PGBD1Q96JS3 809 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 PHF20Q9BVI0 1012 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 GLT8D2Q9H1C3 349 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 KANSL2Q9H9L4 492 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 MTMR4Q9NYA4 1195 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 VPS54Q9P1Q0 977 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 HERC5Q9UII4 1024 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 PCDHA7Q9UN72 937 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 MTMR7Q9Y216 660 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 KIF28PB7ZC32 967 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 RBM26Q5T8P6 1007 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 TMEM179Q6ZVK1 233 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 POTEDQ86YR6 584 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 SRBD1Q8N5C6 995 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 CEP95Q96GE4 821 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 NAT10Q9H0A0 1025 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 ZNF277Q9NRM2 450 aaPredicted RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 IL17RBQ9NRM6 502 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 CLIC4Q9Y696 253 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 MORC2Q9Y6X9 1032 aaPredicted RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 DLEC1Q9Y238 1755 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 SNED1Q8TER0 1413 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 PALM3A6NDB9 673 aaPredicted RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 SMIM22K7EJ46 135 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 AKR1B1P15121 316 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 TPM4P67936 248 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 FUT2Q10981 343 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 TNFAIP1Q13829 316 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 KRT25Q7Z3Z0 450 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 HEATR3Q7Z4Q2 680 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 GAS2L3Q86XJ1 694 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 BLIDQ8IZY5 108 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 DCAF4Q8WV16 495 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 FERMT2Q96AC1 680 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 SH2D4AQ9H788 454 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 DDX4Q9NQI0 724 aaKnown RBP6.91□□□□□ -1.3
VPS50-205ENST00000441602 NYAP2Q9P242 653 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 CLIP2Q9UDT6 1046 aa6.91□□□□□ -1.3
VPS50-205ENST00000441602 MYH1P12882 1939 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 PSMD14O00487 310 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 RAD17O75943 681 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 TXLNAP40222 546 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 NAPAP54920 295 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 TCP10Q12799 353 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 STX1AQ16623 288 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 TTC38Q5R3I4 469 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 KANK3Q6NY19 840 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 PPP1R18Q6NYC8 613 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 ILDR1Q86SU0 546 aaPredicted RBP6.9□□□□□ -1.3
VPS50-205ENST00000441602 CMTR1Q8N1G2 835 aaKnown RBP6.9□□□□□ -1.3
VPS50-205ENST00000441602 PIAS4Q8N2W9 510 aaPredicted RBP6.9□□□□□ -1.3
VPS50-205ENST00000441602 FAM151AQ8WW52 585 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 TIGD1Q96MW7 591 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 TDRD3Q9H7E2 651 aaKnown RBP6.9□□□□□ -1.3
VPS50-205ENST00000441602 ANO10Q9NW15 660 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 SYNPO2Q9UMS6 1093 aa6.9□□□□□ -1.3
VPS50-205ENST00000441602 ATP2B1P20020 1258 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 GUCY1A2P33402 732 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 SYKP43405 635 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 R3HDM1Q15032 1099 aaKnown RBP6.9□□□□□ -1.31
VPS50-205ENST00000441602 PKN1Q16512 942 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 ABCB5Q2M3G0 1257 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 MCTP2Q6DN12 878 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 MTMR14Q8NCE2 650 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 DAGLBQ8NCG7 672 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 HOOK2Q96ED9 719 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 ARHGEF10LQ9HCE6 1279 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.9□□□□□ -1.31
VPS50-205ENST00000441602 PCDHA4Q9UN74 947 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 BCS1LQ9Y276 419 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 LTBP3Q9NS15 1303 aa6.9□□□□□ -1.31
VPS50-205ENST00000441602 SPDYE2BA6NHP3 402 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 SPDYE6P0CI01 402 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 SHMT1P34896 483 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 TYRO3Q06418 890 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 CEP57L1Q8IYX8 460 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 ZNF579Q8NAF0 562 aaKnown RBP6.89□□□□□ -1.31
VPS50-205ENST00000441602 PIBF1Q8WXW3 757 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 NAP1L4Q99733 375 aaKnown RBP6.89□□□□□ -1.31
VPS50-205ENST00000441602 RBSNQ9H1K0 784 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 GJB4Q9NTQ9 266 aa6.89□□□□□ -1.31
VPS50-205ENST00000441602 ZNF70Q9UC06 446 aaPredicted RBP6.89□□□□□ -1.31
VPS50-205ENST00000441602 USP25Q9UHP3 1055 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms