RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ERVK-24P63145 666 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 ALX1Q15699 326 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 CCAR1Q8IX12 1150 aaKnown RBP18.07■□□□□ 0.48
LIMS3-201ENST00000437679 SH3TC2Q8TF17 1288 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 ZNF333Q96JL9 665 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.07■□□□□ 0.48
LIMS3-201ENST00000437679 GOPCQ9HD26 462 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 TXNRD2Q9NNW7 524 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 GABRQQ9UN88 632 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 RABGAP1Q9Y3P9 1069 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 GREB1LQ9C091 1923 aaPredicted RBP18.06■□□□□ 0.48
LIMS3-201ENST00000437679 HSPD1P10809 573 aaKnown RBP18.06■□□□□ 0.48
LIMS3-201ENST00000437679 GRK4P32298 578 aa18.06■□□□□ 0.48
LIMS3-201ENST00000437679 FLT3LGP49771 235 aa18.06■□□□□ 0.48
LIMS3-201ENST00000437679 COG2Q14746 738 aa18.06■□□□□ 0.48
LIMS3-201ENST00000437679 ZNF589Q86UQ0 364 aaPredicted RBP18.06■□□□□ 0.48
LIMS3-201ENST00000437679 SPICE1Q8N0Z3 855 aa18.06■□□□□ 0.48
LIMS3-201ENST00000437679 TMEM106CQ9BVX2 250 aa18.06■□□□□ 0.48
LIMS3-201ENST00000437679 HOXC10Q9NYD6 342 aa18.06■□□□□ 0.48
LIMS3-201ENST00000437679 WDR46O15213 610 aaKnown RBP18.05■□□□□ 0.48
LIMS3-201ENST00000437679 RAD21O60216 631 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 PEX10O60683 326 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 TSPY3P0CV98 308 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 TSPY8P0CW00 308 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 CCNA1P78396 465 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 MLLT1Q03111 559 aaPredicted RBP18.05■□□□□ 0.48
LIMS3-201ENST00000437679 KIAA1755Q5JYT7 1200 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 TTC22Q5TAA0 569 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 CWC27Q6UX04 472 aaKnown RBP18.05■□□□□ 0.48
LIMS3-201ENST00000437679 LBX2Q6XYB7 198 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 SLAIN1Q8ND83 568 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 CWC22Q9HCG8 908 aaKnown RBP18.05■□□□□ 0.48
LIMS3-201ENST00000437679 NYAP2Q9P242 653 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 BIN2Q9UBW5 565 aaPredicted RBP18.05■□□□□ 0.48
LIMS3-201ENST00000437679 ANAPC4Q9UJX5 808 aa18.05■□□□□ 0.48
LIMS3-201ENST00000437679 SPDYE16A6NNV3 312 aaPredicted RBP18.04■□□□□ 0.48
LIMS3-201ENST00000437679 ADCY3O60266 1144 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 FGAP02671 866 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 MAPK4P31152 587 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 TFAP4Q01664 338 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 CTDSPL2Q05D32 466 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 IRF5Q13568 498 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 Q3C1V9 767 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 NEDD1Q8NHV4 660 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 CENPFP49454 3210 aa18.04■□□□□ 0.48
LIMS3-201ENST00000437679 ZMYM6O95789 1325 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 IGKV6D-41A0A0C4DH26 115 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 CNMDO75829 334 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 FLOT1O75955 427 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 MYCP01106 439 aaPredicted RBP18.03■□□□□ 0.48
LIMS3-201ENST00000437679 UBXN2AP68543 259 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 FAM47AQ5JRC9 791 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 POTEEQ6S8J3 1075 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 CEP95Q96GE4 821 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 MTMR4Q9NYA4 1195 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 CLIP2Q9UDT6 1046 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.03■□□□□ 0.48
LIMS3-201ENST00000437679 PLIN4Q96Q06 1357 aa18.03■□□□□ 0.48
LIMS3-201ENST00000437679 MYH4Q9Y623 1939 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 TSPY2A6NKD2 308 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 TTLL1O95922 423 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 GSPT1P15170 499 aaKnown RBP18.02■□□□□ 0.48
LIMS3-201ENST00000437679 DSG3P32926 999 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 PPP4R3BQ5MIZ7 849 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 MB21D1Q8N884 522 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 PXYLP1Q8TE99 480 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 PORCNQ9H237 461 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 BTBD7Q9P203 1132 aa18.02■□□□□ 0.48
LIMS3-201ENST00000437679 POTEFA5A3E0 1075 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 RANBP6O60518 1105 aaKnown RBP18.01■□□□□ 0.47
LIMS3-201ENST00000437679 SAMD1Q6SPF0 538 aaPredicted RBP18.01■□□□□ 0.47
LIMS3-201ENST00000437679 PLEKHH3Q7Z736 793 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 SOCS4Q8WXH5 440 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 MKL1Q969V6 931 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 NUDT12Q9BQG2 462 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 TOMM22Q9NS69 142 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 GJD2Q9UKL4 321 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 SYNPO2Q9UMS6 1093 aa18.01■□□□□ 0.47
LIMS3-201ENST00000437679 RLFQ13129 1914 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 F5H6K3 240 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 ORC4O43929 436 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 ELNP15502 786 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 KLRC3Q07444 240 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 FAM83BQ5T0W9 1011 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 WDR78Q5VTH9 848 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 GPR142Q7Z601 462 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 INCENPQ9NQS7 918 aa18■□□□□ 0.47
LIMS3-201ENST00000437679 RBBP6Q7Z6E9 1792 aaKnown RBP17.99■□□□□ 0.47
LIMS3-201ENST00000437679 NDUFB10O96000 172 aa17.99■□□□□ 0.47
LIMS3-201ENST00000437679 FGRP09769 529 aa17.99■□□□□ 0.47
LIMS3-201ENST00000437679 HAND2P61296 217 aa17.99■□□□□ 0.47
LIMS3-201ENST00000437679 MTFR1Q15390 333 aa17.99■□□□□ 0.47
LIMS3-201ENST00000437679 RRP12Q5JTH9 1297 aaKnown RBP17.99■□□□□ 0.47
LIMS3-201ENST00000437679 CENPQQ7L2Z9 268 aaPredicted RBP17.99■□□□□ 0.47
LIMS3-201ENST00000437679 LRRC47Q8N1G4 583 aaKnown RBP17.99■□□□□ 0.47
LIMS3-201ENST00000437679 ATG4CQ96DT6 458 aa17.99■□□□□ 0.47
LIMS3-201ENST00000437679 INHAP05111 366 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 PCP11498 1178 aaKnown RBP17.98■□□□□ 0.47
LIMS3-201ENST00000437679 CCL5P13501 91 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 CYP2B6P20813 491 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms