RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 VCAM1P19320 739 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L24Q0WX57 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 FBXO46Q6PJ61 603 aaPredicted RBP13.59□□□□□ -0.23
COL28A1-203ENST00000435823 OTOP1Q7RTM1 612 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 CLEC10AQ8IUN9 316 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 ANKRD13CQ8N6S4 541 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 GTF3C2Q8WUA4 911 aaPredicted RBP13.59□□□□□ -0.23
COL28A1-203ENST00000435823 LPAR1Q92633 364 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 ABHD8Q96I13 439 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 PCDH10Q9P2E7 1040 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 TMX2Q9Y320 296 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 TSPY2A6NKD2 308 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 FMNL1O95466 1100 aaPredicted RBP13.58□□□□□ -0.24
COL28A1-203ENST00000435823 GNRH1P01148 92 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 CHMLP26374 656 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 PSMC4P43686 418 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 HERVK_113P62684 666 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 FAM110CQ1W6H9 321 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 PPP4R3BQ5MIZ7 849 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 DSCC1Q9BVC3 393 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 RPAP3Q9H6T3 665 aaPredicted RBP13.58□□□□□ -0.24
COL28A1-203ENST00000435823 VCPKMTQ9H867 229 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 GOPCQ9HD26 462 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 TOMM22Q9NS69 142 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 NYAP2Q9P242 653 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 CTNNA3Q9UI47 895 aa13.58□□□□□ -0.24
COL28A1-203ENST00000435823 GREB1LQ9C091 1923 aaPredicted RBP13.58□□□□□ -0.24
COL28A1-203ENST00000435823 ZNF213O14771 459 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 ECM2O94769 699 aaPredicted RBP13.57□□□□□ -0.24
COL28A1-203ENST00000435823 HOXD10P28358 340 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 FCGRTP55899 365 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 HAND2P61296 217 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 TFAP4Q01664 338 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 CATSPERGQ6ZRH7 1159 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 SIAH1Q8IUQ4 282 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 NEDD1Q8NHV4 660 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 P2RX7Q99572 595 aaKnown RBP13.57□□□□□ -0.24
COL28A1-203ENST00000435823 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL28A1-203ENST00000435823 TANGO6Q9C0B7 1094 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 ARHGAP39Q9C0H5 1083 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 RNF41Q9H4P4 317 aaPredicted RBP13.57□□□□□ -0.24
COL28A1-203ENST00000435823 PPP4R2Q9NY27 417 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL28A1-203ENST00000435823 PLIN4Q96Q06 1357 aa13.57□□□□□ -0.24
COL28A1-203ENST00000435823 IGKV6D-41A0A0C4DH26 115 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 WDR46O15213 610 aaKnown RBP13.56□□□□□ -0.24
COL28A1-203ENST00000435823 ORC4O43929 436 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 RAD21O60216 631 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 RANBP6O60518 1105 aaKnown RBP13.56□□□□□ -0.24
COL28A1-203ENST00000435823 PCP11498 1178 aaKnown RBP13.56□□□□□ -0.24
COL28A1-203ENST00000435823 PRMT2P55345 433 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 IMMTQ16891 758 aaKnown RBP13.56□□□□□ -0.24
COL28A1-203ENST00000435823 BMP2KLQ5H9B9 411 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 FAM47AQ5JRC9 791 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 RRP12Q5JTH9 1297 aaKnown RBP13.56□□□□□ -0.24
COL28A1-203ENST00000435823 MFSD6Q6ZSS7 791 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 SPICE1Q8N0Z3 855 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 CEP95Q96GE4 821 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 CLIP2Q9UDT6 1046 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 PTPN22Q9Y2R2 807 aa13.56□□□□□ -0.24
COL28A1-203ENST00000435823 TNPO2O14787 897 aaKnown RBP13.55□□□□□ -0.24
COL28A1-203ENST00000435823 TTLL1O95922 423 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 FGRP09769 529 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 AKNAD1Q5T1N1 836 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 IFFO2Q5TF58 517 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 SKAP1Q86WV1 359 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 GPRC5AQ8NFJ5 357 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 IL25Q9H293 177 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 MTMR4Q9NYA4 1195 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 MORF4L1Q9UBU8 362 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 SYNPO2Q9UMS6 1093 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 HPS5Q9UPZ3 1129 aa13.55□□□□□ -0.24
COL28A1-203ENST00000435823 CCDC85CA6NKD9 419 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 SGSM2O43147 1006 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 NT5C2P49902 561 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 CAP1Q01518 475 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 COG2Q14746 738 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 CASC1Q6TDU7 716 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 CCAR1Q8IX12 1150 aaKnown RBP13.54□□□□□ -0.24
COL28A1-203ENST00000435823 STAG1Q8WVM7 1258 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 TRIM47Q96LD4 638 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 PAGR1Q9BTK6 254 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 INCENPQ9NQS7 918 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 HOXC10Q9NYD6 342 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 STX8Q9UNK0 236 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 RABGAP1Q9Y3P9 1069 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 LAMA4Q16363 1823 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 MYH4Q9Y623 1939 aa13.54□□□□□ -0.24
COL28A1-203ENST00000435823 ZSWIM8A7E2V4 1837 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 MGAMO43451 1857 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 SPDYE16A6NNV3 312 aaPredicted RBP13.53□□□□□ -0.24
COL28A1-203ENST00000435823 F5H6K3 240 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 FLOT1O75955 427 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 ATXN8OSP0DMR3 200 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 CTGFP29279 349 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 CCNA1P78396 465 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 KLRC3Q07444 240 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 MKRN4PQ13434 485 aaPredicted RBP13.53□□□□□ -0.24
COL28A1-203ENST00000435823 KIAA1755Q5JYT7 1200 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 LBX2Q6XYB7 198 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms