RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 IRX2Q9BZI1 471 aaPredicted RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 CNNM2Q9H8M5 875 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 NRAPQ86VF7 1730 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 CICQ96RK0 1608 aaPredicted RBP9.56□□□□□ -0.88
CD44-208ENST00000428726 ZFPM1Q8IX07 1006 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 CCAR2Q8N163 923 aaKnown RBP9.56□□□□□ -0.88
CD44-208ENST00000428726 TMEM260Q9NX78 707 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 BIN2Q9UBW5 565 aaPredicted RBP9.56□□□□□ -0.88
CD44-208ENST00000428726 PRDM4Q9UKN5 801 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 TFR2Q9UP52 801 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 BCL9LQ86UU0 1499 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 TEX33O43247 280 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 DEXIO95424 95 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 GYS1P13807 737 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 CMA1P23946 247 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 MTF1Q14872 753 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 SLC35G1Q2M3R5 365 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 NFE2L3Q9Y4A8 694 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 DOCK2Q92608 1830 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 YEATS4O95619 227 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 APBA3O96018 575 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 LIFRP42702 1097 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 VPS72Q15906 364 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 LETM2Q2VYF4 491 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 ARMCX5Q6P1M9 558 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 KRBA2Q6ZNG9 492 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 BARGINQ6ZT62 677 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 CCDC84Q86UT8 332 aaPredicted RBP9.56□□□□□ -0.88
CD44-208ENST00000428726 SGMS1Q86VZ5 419 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 PROM2Q8N271 834 aa9.56□□□□□ -0.88
CD44-208ENST00000428726 CCDC94Q9BW85 323 aaPredicted RBP9.56□□□□□ -0.88
CD44-208ENST00000428726 RNF41Q9H4P4 317 aaPredicted RBP9.56□□□□□ -0.88
CD44-208ENST00000428726 PHLPP1O60346 1717 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 MYH13Q9UKX3 1938 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 A0A1W2PQ27 194 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 A0A1W2PQ64 194 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 A0A1W2PQD8 194 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 TRIM75PA6NK02 468 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 CD44P16070 742 aaKnown RBP9.55□□□□□ -0.88
CD44-208ENST00000428726 GNAT2P19087 354 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 TTBK2Q6IQ55 1244 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 CLEC4GQ6UXB4 293 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 SYT10Q6XYQ8 523 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 CD209Q9NNX6 404 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 LAMB2P55268 1798 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 C4AP0C0L4 1744 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 C4BP0C0L5 1744 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 TRIM49BA6NDI0 452 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 CYTH3O43739 400 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 NFIAQ12857 509 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 NCAPHQ15003 741 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 ZYXQ15942 572 aaKnown RBP9.55□□□□□ -0.88
CD44-208ENST00000428726 RCSD1Q6JBY9 416 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 KCTD1Q719H9 257 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 VPS16Q9H269 839 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 TMEM60Q9H2L4 133 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 FBXO2Q9UK22 296 aaPredicted RBP9.55□□□□□ -0.88
CD44-208ENST00000428726 MAN1B1Q9UKM7 699 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 GDAQ9Y2T3 454 aa9.55□□□□□ -0.88
CD44-208ENST00000428726 KRT2P35908 639 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 POSTNQ15063 836 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 IL17AQ16552 155 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 SPICE1Q8N0Z3 855 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 MED15Q96RN5 788 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 LAMA3Q16787 3333 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 PNPLA7Q6ZV29 1317 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 USP17L5A8MUK1 530 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 NKRFO15226 690 aaKnown RBP eCLIP9.54□□□□□ -0.88
CD44-208ENST00000428726 NLRP12P59046 1061 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 CACNB1Q02641 598 aaPredicted RBP9.54□□□□□ -0.88
CD44-208ENST00000428726 DPYDQ12882 1025 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 CUL4BQ13620 913 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.54□□□□□ -0.88
CD44-208ENST00000428726 NUP88Q99567 741 aaPredicted RBP9.54□□□□□ -0.88
CD44-208ENST00000428726 NOL10Q9BSC4 688 aaKnown RBP9.54□□□□□ -0.88
CD44-208ENST00000428726 NYXQ9GZU5 481 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 KANSL2Q9H9L4 492 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 ST7Q9NRC1 585 aa9.54□□□□□ -0.88
CD44-208ENST00000428726 TTF2Q9UNY4 1162 aaKnown RBP9.54□□□□□ -0.88
CD44-208ENST00000428726 UBE2SQ16763 222 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 TTC38Q5R3I4 469 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 SMARCE1Q969G3 411 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 CEP95Q96GE4 821 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 TRERF1Q96PN7 1200 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 PIGSQ96S52 555 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 TMEM47Q9BQJ4 181 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 NAT10Q9H0A0 1025 aaKnown RBP9.53□□□□□ -0.88
CD44-208ENST00000428726 HSD3B7Q9H2F3 369 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 GGA1Q9UJY5 639 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 SSBP05455 408 aaKnown RBP eCLIP9.53□□□□□ -0.88
CD44-208ENST00000428726 MMP10P09238 476 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 GRAPQ13588 217 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 RESP18Q5W5W9 173 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 CEP135Q66GS9 1140 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 DPP8Q6V1X1 898 aaPredicted RBP9.53□□□□□ -0.88
CD44-208ENST00000428726 GRAPLQ8TC17 118 aaPredicted RBP9.53□□□□□ -0.88
CD44-208ENST00000428726 EYA3Q99504 573 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 DDX4Q9NQI0 724 aaKnown RBP9.53□□□□□ -0.88
CD44-208ENST00000428726 ERICH4A6NGS2 130 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 KLRF2D3W0D1 207 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms