RNA–Protein interactions for RNA: ENST00000426539.1

GACAT3-201, gastric cancer associated transcript 3, humanhuman

TSL 3 BASIC

Gene GACAT3, Length 1,096 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GACAT3-201ENST00000426539 LHX8Q68G74 356 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 SIAH1Q8IUQ4 282 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 APBA2Q99767 749 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 HAUS7Q99871 368 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 NBPF3Q9H094 633 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 PAG1Q9NWQ8 432 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 FLRT1Q9NZU1 646 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 STAP2Q9UGK3 403 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 RCAN3Q9UKA8 241 aa12.16□□□□□ -0.46
GACAT3-201ENST00000426539 PFASO15067 1338 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 MBD4O95243 580 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 IGHA2P01877 340 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 PTPREP23469 700 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 CLEC10AQ8IUN9 316 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 TRMT44Q8IYL2 757 aaKnown RBP12.15□□□□□ -0.46
GACAT3-201ENST00000426539 C7orf61Q8IZ16 206 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 C11orf49Q9H6J7 331 aa12.15□□□□□ -0.46
GACAT3-201ENST00000426539 FARP1Q9Y4F1 1045 aaPredicted RBP12.15□□□□□ -0.46
GACAT3-201ENST00000426539 ALPK3Q96L96 1907 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 CYP2D7A0A087X1C5 515 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 SLC15A5A6NIM6 579 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 MPHOSPH10O00566 681 aaKnown RBP12.14□□□□□ -0.47
GACAT3-201ENST00000426539 SOX1O00570 391 aaPredicted RBP12.14□□□□□ -0.47
GACAT3-201ENST00000426539 SMARCA5O60264 1052 aaPredicted RBP12.14□□□□□ -0.47
GACAT3-201ENST00000426539 COL6A1P12109 1028 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 AKR1B1P15121 316 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 CCNA1P78396 465 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 GRB14Q14449 540 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 CCAR1Q8IX12 1150 aaKnown RBP12.14□□□□□ -0.47
GACAT3-201ENST00000426539 NPLOC4Q8TAT6 608 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 ZMYND8Q9ULU4 1186 aaPredicted RBP12.14□□□□□ -0.47
GACAT3-201ENST00000426539 NAV1Q8NEY1 1877 aa12.14□□□□□ -0.47
GACAT3-201ENST00000426539 HOXC6P09630 235 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 UBE3CQ15386 1083 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 C12orf60Q5U649 245 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 WDR78Q5VTH9 848 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 TMEM179Q6ZVK1 233 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 GDF15Q99988 308 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 MOV10L1Q9BXT6 1211 aaKnown RBP12.13□□□□□ -0.47
GACAT3-201ENST00000426539 ATP8A2Q9NTI2 1148 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 SWAP70Q9UH65 585 aa12.13□□□□□ -0.47
GACAT3-201ENST00000426539 RANBP2P49792 3224 aaKnown RBP12.13□□□□□ -0.47
GACAT3-201ENST00000426539 A0A1W2PPC1 479 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 USP17L12C9JPN9 530 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 USP17L21D6R901 530 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 SYN1P17600 705 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 CDK8P49336 464 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 COG2Q14746 738 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 TRPV1Q8NER1 839 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 SPOCK2Q92563 424 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 PUS7LQ9H0K6 701 aaKnown RBP12.12□□□□□ -0.47
GACAT3-201ENST00000426539 TMX2Q9Y320 296 aa12.12□□□□□ -0.47
GACAT3-201ENST00000426539 GLRX3O76003 335 aaKnown RBP12.11□□□□□ -0.47
GACAT3-201ENST00000426539 CYP2C19P33261 490 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 BMP8BP34820 402 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 ICA1Q05084 483 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 LRRC26Q2I0M4 334 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 MFSD14CQ5VZR4 134 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 CTR9Q6PD62 1173 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 C16orf86Q6ZW13 317 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 SPICE1Q8N0Z3 855 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 LRCH3Q96II8 777 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 LRRCC1Q9C099 1032 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 TANGO6Q9C0B7 1094 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.11□□□□□ -0.47
GACAT3-201ENST00000426539 SPATC1LQ9H0A9 340 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 CHMP4BQ9H444 224 aaKnown RBP12.11□□□□□ -0.47
GACAT3-201ENST00000426539 CWC22Q9HCG8 908 aaKnown RBP12.11□□□□□ -0.47
GACAT3-201ENST00000426539 HOXC10Q9NYD6 342 aa12.11□□□□□ -0.47
GACAT3-201ENST00000426539 COBLO75128 1261 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 ERCC3P19447 782 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 ATP2B2Q01814 1243 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 SHCBP1Q8NEM2 672 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 LPAR1Q92633 364 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 ATG4CQ96DT6 458 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 CCDC17Q96LX7 622 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.1□□□□□ -0.47
GACAT3-201ENST00000426539 VCPKMTQ9H867 229 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 DDX20Q9UHI6 824 aaKnown RBP12.1□□□□□ -0.47
GACAT3-201ENST00000426539 SLC4A4Q9Y6R1 1079 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 IVNS1ABPQ9Y6Y0 642 aa12.1□□□□□ -0.47
GACAT3-201ENST00000426539 RLFQ13129 1914 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 CYBAP13498 195 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 EEF2P13639 858 aaKnown RBP12.09□□□□□ -0.47
GACAT3-201ENST00000426539 ADORA2AP29274 412 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 MAGEA10P43363 369 aaPredicted RBP12.09□□□□□ -0.47
GACAT3-201ENST00000426539 TSHZ3Q63HK5 1081 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 STRBPQ96SI9 672 aaKnown RBP12.09□□□□□ -0.47
GACAT3-201ENST00000426539 DCTPP1Q9H773 170 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 ARHGEF10LQ9HCE6 1279 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 ECHDC1Q9NTX5 307 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 ADAMTS5Q9UNA0 930 aa12.09□□□□□ -0.47
GACAT3-201ENST00000426539 A0A0G2JMZ2 1700 aa12.08□□□□□ -0.47
GACAT3-201ENST00000426539 SZT2Q5T011 3432 aa12.08□□□□□ -0.48
GACAT3-201ENST00000426539 WDR46O15213 610 aaKnown RBP12.08□□□□□ -0.48
GACAT3-201ENST00000426539 STRNO43815 780 aa12.08□□□□□ -0.48
GACAT3-201ENST00000426539 FLOT1O75955 427 aa12.08□□□□□ -0.48
GACAT3-201ENST00000426539 TMEM132BQ14DG7 1078 aa12.08□□□□□ -0.48
GACAT3-201ENST00000426539 OLFML2BQ68BL8 750 aa12.08□□□□□ -0.48
GACAT3-201ENST00000426539 MB21D1Q8N884 522 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms