RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.17■□□□□ 0.5
UBXN4-203ENST00000416538 PLXNA1Q9UIW2 1896 aa18.17■□□□□ 0.5
UBXN4-203ENST00000416538 GPAA1O43292 621 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 SGPL1O95470 568 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 ICA1Q05084 483 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 CCL14Q16627 93 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 MORN1Q5T089 497 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 ZSCAN25Q6NSZ9 544 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 GTF3C2Q8WUA4 911 aaPredicted RBP18.16■□□□□ 0.5
UBXN4-203ENST00000416538 GPATCH3Q96I76 525 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.16■□□□□ 0.5
UBXN4-203ENST00000416538 CRISPLD2Q9H0B8 497 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 RABGAP1Q9Y3P9 1069 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 TTC41PQ6P2S7 1318 aa18.16■□□□□ 0.5
UBXN4-203ENST00000416538 RNF113AO15541 343 aaKnown RBP18.15■□□□□ 0.5
UBXN4-203ENST00000416538 FARP2O94887 1054 aaPredicted RBP18.15■□□□□ 0.5
UBXN4-203ENST00000416538 MAPK4P31152 587 aa18.15■□□□□ 0.5
UBXN4-203ENST00000416538 MAP3K21Q5TCX8 1036 aa18.15■□□□□ 0.5
UBXN4-203ENST00000416538 NKX2-3Q8TAU0 364 aa18.15■□□□□ 0.5
UBXN4-203ENST00000416538 SOCS4Q8WXH5 440 aa18.15■□□□□ 0.5
UBXN4-203ENST00000416538 SEC62Q99442 399 aaKnown RBP18.15■□□□□ 0.5
UBXN4-203ENST00000416538 ARPP21Q9UBL0 812 aaPredicted RBP18.15■□□□□ 0.5
UBXN4-203ENST00000416538 SPICE1Q8N0Z3 855 aa18.14■□□□□ 0.49
UBXN4-203ENST00000416538 DIS3LQ8TF46 1054 aaKnown RBP18.14■□□□□ 0.49
UBXN4-203ENST00000416538 NUDT12Q9BQG2 462 aa18.14■□□□□ 0.49
UBXN4-203ENST00000416538 TMX2Q9Y320 296 aa18.14■□□□□ 0.49
UBXN4-203ENST00000416538 H0YGN5 161 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 FOXP2O15409 715 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 MX1P20591 662 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 RASA1P20936 1047 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 MNX1P50219 401 aaPredicted RBP18.13■□□□□ 0.49
UBXN4-203ENST00000416538 SBK1Q52WX2 424 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 POTEHQ6S545 545 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 PLEKHH3Q7Z736 793 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 STK11IPQ8N1F8 1099 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 TANGO6Q9C0B7 1094 aa18.13■□□□□ 0.49
UBXN4-203ENST00000416538 XRCC5P13010 732 aaKnown RBP18.12■□□□□ 0.49
UBXN4-203ENST00000416538 EEF2P13639 858 aaKnown RBP18.12■□□□□ 0.49
UBXN4-203ENST00000416538 PRKAR2AP13861 404 aaKnown RBP18.12■□□□□ 0.49
UBXN4-203ENST00000416538 CCDC17Q96LX7 622 aa18.12■□□□□ 0.49
UBXN4-203ENST00000416538 APBA2Q99767 749 aa18.12■□□□□ 0.49
UBXN4-203ENST00000416538 VCPKMTQ9H867 229 aa18.12■□□□□ 0.49
UBXN4-203ENST00000416538 FLRT1Q9NZU1 646 aa18.12■□□□□ 0.49
UBXN4-203ENST00000416538 GLRX3O76003 335 aaKnown RBP18.11■□□□□ 0.49
UBXN4-203ENST00000416538 ZFYP08048 801 aaPredicted RBP18.11■□□□□ 0.49
UBXN4-203ENST00000416538 MAP2K5Q13163 448 aa18.11■□□□□ 0.49
UBXN4-203ENST00000416538 ATG4CQ96DT6 458 aa18.11■□□□□ 0.49
UBXN4-203ENST00000416538 MOV10L1Q9BXT6 1211 aaKnown RBP18.11■□□□□ 0.49
UBXN4-203ENST00000416538 ARHGEF10LQ9HCE6 1279 aa18.11■□□□□ 0.49
UBXN4-203ENST00000416538 RPTORQ8N122 1335 aa18.11■□□□□ 0.49
UBXN4-203ENST00000416538 ZKSCAN1P17029 563 aaPredicted RBP18.1■□□□□ 0.49
UBXN4-203ENST00000416538 PTPREP23469 700 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 CCND3P30281 292 aaPredicted RBP18.1■□□□□ 0.49
UBXN4-203ENST00000416538 RGS2P41220 211 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 CACNB2Q08289 660 aaPredicted RBP18.1■□□□□ 0.49
UBXN4-203ENST00000416538 HDAC1Q13547 482 aaPredicted RBP18.1■□□□□ 0.49
UBXN4-203ENST00000416538 GRB14Q14449 540 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 ZMYM1Q5SVZ6 1142 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 GIMAP6Q6P9H5 292 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 AMOTL1Q8IY63 956 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 LPAR1Q92633 364 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 DDRGK1Q96HY6 314 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 FSD1Q9BTV5 496 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 FBXO28Q9NVF7 368 aa18.1■□□□□ 0.49
UBXN4-203ENST00000416538 MINDY4BA8MYZ0 360 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 ERC2O15083 957 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 WDR46O15213 610 aaKnown RBP18.09■□□□□ 0.49
UBXN4-203ENST00000416538 COG2Q14746 738 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 HABP4Q5JVS0 413 aaKnown RBP18.09■□□□□ 0.49
UBXN4-203ENST00000416538 ANKRD45Q5TZF3 282 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 WDR78Q5VTH9 848 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 CCDC129Q6ZRS4 1044 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 NPLOC4Q8TAT6 608 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 HMX1Q9NP08 348 aaPredicted RBP18.09■□□□□ 0.49
UBXN4-203ENST00000416538 MCM3APO60318 1980 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 LAMA4Q16363 1823 aa18.09■□□□□ 0.49
UBXN4-203ENST00000416538 SMCHD1A6NHR9 2005 aa18.08■□□□□ 0.49
UBXN4-203ENST00000416538 IGKV6D-41A0A0C4DH26 115 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 PRDM1O75626 825 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 FLOT1O75955 427 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 IGHA2P01877 340 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 TFRCP02786 760 aaKnown RBP18.08■□□□□ 0.48
UBXN4-203ENST00000416538 CCNA1P78396 465 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 ATP2B2Q01814 1243 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 IFNL3Q8IZI9 196 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 PAWRQ96IZ0 340 aaKnown RBP18.08■□□□□ 0.48
UBXN4-203ENST00000416538 SPATC1LQ9H0A9 340 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 KANSL2Q9H9L4 492 aa18.08■□□□□ 0.48
UBXN4-203ENST00000416538 COLQQ9Y215 455 aaPredicted RBP18.08■□□□□ 0.48
UBXN4-203ENST00000416538 PLIN4Q96Q06 1357 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 RANBP2P49792 3224 aaKnown RBP18.07■□□□□ 0.48
UBXN4-203ENST00000416538 SLC15A5A6NIM6 579 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 HOXC6P09630 235 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 TDO2P48775 406 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 PDE1AP54750 535 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 CCAR1Q8IX12 1150 aaKnown RBP18.07■□□□□ 0.48
UBXN4-203ENST00000416538 NUP88Q99567 741 aaPredicted RBP18.07■□□□□ 0.48
UBXN4-203ENST00000416538 SH2D4AQ9H788 454 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 STAP2Q9UGK3 403 aa18.07■□□□□ 0.48
UBXN4-203ENST00000416538 OGDHLQ9ULD0 1010 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms