RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 USP17L12C9JPN9 530 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 USP17L21D6R901 530 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 SOX1O00570 391 aaPredicted RBP13.96□□□□□ -0.17
USP4-204ENST00000416417 PTPREP23469 700 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 CCNA1P78396 465 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 ANKLE1Q8NAG6 615 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 LRRCC1Q9C099 1032 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 PUS7LQ9H0K6 701 aaKnown RBP13.96□□□□□ -0.17
USP4-204ENST00000416417 SLC4A4Q9Y6R1 1079 aa13.96□□□□□ -0.17
USP4-204ENST00000416417 SZT2Q5T011 3432 aa13.96□□□□□ -0.18
USP4-204ENST00000416417 CYP2C19P33261 490 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 CDK8P49336 464 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 ATP2B2Q01814 1243 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 TMEM179Q6ZVK1 233 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 MOV10L1Q9BXT6 1211 aaKnown RBP13.95□□□□□ -0.18
USP4-204ENST00000416417 SLC15A5A6NIM6 579 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 CNGA1P29973 690 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 ICA1Q05084 483 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 COG2Q14746 738 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 C12orf60Q5U649 245 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 LBX2Q6XYB7 198 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 TRMT44Q8IYL2 757 aaKnown RBP13.95□□□□□ -0.18
USP4-204ENST00000416417 TRPV1Q8NER1 839 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 ATG4CQ96DT6 458 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 LRCH3Q96II8 777 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP4-204ENST00000416417 ATP8A2Q9NTI2 1148 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 IVNS1ABPQ9Y6Y0 642 aa13.95□□□□□ -0.18
USP4-204ENST00000416417 BAZ2AQ9UIF9 1905 aaKnown RBP13.94□□□□□ -0.18
USP4-204ENST00000416417 GLRX3O76003 335 aaKnown RBP13.94□□□□□ -0.18
USP4-204ENST00000416417 GRB14Q14449 540 aa13.94□□□□□ -0.18
USP4-204ENST00000416417 PLS1Q14651 629 aa13.94□□□□□ -0.18
USP4-204ENST00000416417 LRRC26Q2I0M4 334 aa13.94□□□□□ -0.18
USP4-204ENST00000416417 ANO1Q5XXA6 986 aa13.94□□□□□ -0.18
USP4-204ENST00000416417 CTR9Q6PD62 1173 aa13.94□□□□□ -0.18
USP4-204ENST00000416417 SWAP70Q9UH65 585 aa13.94□□□□□ -0.18
USP4-204ENST00000416417 RAD21O60216 631 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 FLOT1O75955 427 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 EEF2P13639 858 aaKnown RBP13.93□□□□□ -0.18
USP4-204ENST00000416417 CAPN2P17655 700 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 ERCC3P19447 782 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 ADORA2AP29274 412 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 UBE3CQ15386 1083 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 MFSD14CQ5VZR4 134 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 SPATC1LQ9H0A9 340 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 FBXO28Q9NVF7 368 aa13.93□□□□□ -0.18
USP4-204ENST00000416417 COBLO75128 1261 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 COL6A1P12109 1028 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 DSG3P32926 999 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 MAGEA10P43363 369 aaPredicted RBP13.92□□□□□ -0.18
USP4-204ENST00000416417 C16orf86Q6ZW13 317 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 DPP9Q86TI2 863 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 NCAPG2Q86XI2 1143 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 GDF15Q99988 308 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 CHMP4BQ9H444 224 aaKnown RBP13.92□□□□□ -0.18
USP4-204ENST00000416417 VCPKMTQ9H867 229 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 ARHGEF10LQ9HCE6 1279 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 HOXC10Q9NYD6 342 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 TMX2Q9Y320 296 aa13.92□□□□□ -0.18
USP4-204ENST00000416417 PRAMEF19Q5SWL8 479 aa13.91□□□□□ -0.18
USP4-204ENST00000416417 OSBP2Q969R2 916 aa13.91□□□□□ -0.18
USP4-204ENST00000416417 STRBPQ96SI9 672 aaKnown RBP13.91□□□□□ -0.18
USP4-204ENST00000416417 ECHDC1Q9NTX5 307 aa13.91□□□□□ -0.18
USP4-204ENST00000416417 DDX20Q9UHI6 824 aaKnown RBP13.91□□□□□ -0.18
USP4-204ENST00000416417 RLFQ13129 1914 aa13.9□□□□□ -0.18
USP4-204ENST00000416417 MYCNP04198 464 aaPredicted RBP13.9□□□□□ -0.18
USP4-204ENST00000416417 HOXC6P09630 235 aa13.9□□□□□ -0.18
USP4-204ENST00000416417 ATN1P54259 1190 aaPredicted RBP13.9□□□□□ -0.18
USP4-204ENST00000416417 TMEM132BQ14DG7 1078 aa13.9□□□□□ -0.18
USP4-204ENST00000416417 AMOTL1Q8IY63 956 aa13.9□□□□□ -0.18
USP4-204ENST00000416417 NUP88Q99567 741 aaPredicted RBP13.9□□□□□ -0.18
USP4-204ENST00000416417 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.9□□□□□ -0.18
USP4-204ENST00000416417 SENP6Q9GZR1 1112 aaPredicted RBP13.9□□□□□ -0.18
USP4-204ENST00000416417 GSG1L2A8MUP6 293 aa13.9□□□□□ -0.19
USP4-204ENST00000416417 MINDY4BA8MYZ0 360 aa13.9□□□□□ -0.19
USP4-204ENST00000416417 GJC2Q5T442 439 aaPredicted RBP13.9□□□□□ -0.19
USP4-204ENST00000416417 ZSCAN25Q6NSZ9 544 aa13.9□□□□□ -0.19
USP4-204ENST00000416417 DDRGK1Q96HY6 314 aa13.9□□□□□ -0.19
USP4-204ENST00000416417 CCDC17Q96LX7 622 aa13.9□□□□□ -0.19
USP4-204ENST00000416417 DCTPP1Q9H773 170 aa13.9□□□□□ -0.19
USP4-204ENST00000416417 A0A0G2JMZ2 1700 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 M0R2C6 588 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 IGHA2P01877 340 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 CYBAP13498 195 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 MDM2Q00987 491 aaPredicted RBP13.89□□□□□ -0.19
USP4-204ENST00000416417 FAM83BQ5T0W9 1011 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 KBTBD3Q8NAB2 608 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 OTUD7AQ8TE49 926 aaPredicted RBP13.89□□□□□ -0.19
USP4-204ENST00000416417 LPAR1Q92633 364 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 SH2D4AQ9H788 454 aa13.89□□□□□ -0.19
USP4-204ENST00000416417 EPB41L4AQ9HCS5 686 aaPredicted RBP13.89□□□□□ -0.19
USP4-204ENST00000416417 MYH8P13535 1937 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 WDR46O15213 610 aaKnown RBP13.88□□□□□ -0.19
USP4-204ENST00000416417 PGK2P07205 417 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 RASA1P20936 1047 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 SHCBP1Q8NEM2 672 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 SEC62Q99442 399 aaKnown RBP13.88□□□□□ -0.19
USP4-204ENST00000416417 UBE2OQ9C0C9 1292 aaKnown RBP13.88□□□□□ -0.19
USP4-204ENST00000416417 KANSL2Q9H9L4 492 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 PCDHB15Q9Y5E8 787 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms