RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SUGT1Q9Y2Z0 365 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 DAGLAQ9Y4D2 1042 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 SNED1Q8TER0 1413 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 ZC3H12CQ9C0D7 883 aaKnown RBP23.08■■□□□ 1.28
USP39-204ENST00000409766 MAD2L2Q9UI95 211 aa23.08■■□□□ 1.28
USP39-204ENST00000409766 PNOCQ13519 176 aa23.07■■□□□ 1.28
USP39-204ENST00000409766 STAG2Q8N3U4 1231 aa23.07■■□□□ 1.28
USP39-204ENST00000409766 CNNM3Q8NE01 707 aa23.07■■□□□ 1.28
USP39-204ENST00000409766 MRFAP1L1Q96HT8 127 aa23.07■■□□□ 1.28
USP39-204ENST00000409766 PARP3Q9Y6F1 533 aa23.07■■□□□ 1.28
USP39-204ENST00000409766 QSER1Q2KHR3 1735 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 NOM1Q5C9Z4 860 aaKnown RBP23.06■■□□□ 1.28
USP39-204ENST00000409766 TMEM47Q9BQJ4 181 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 PTGS1P23219 599 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 GNAQP50148 359 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 MDM2Q00987 491 aaPredicted RBP23.06■■□□□ 1.28
USP39-204ENST00000409766 DPP8Q6V1X1 898 aaPredicted RBP23.06■■□□□ 1.28
USP39-204ENST00000409766 DRC7Q8IY82 874 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 CERS5Q8N5B7 392 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 MASTLQ96GX5 879 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 NAP1L5Q96NT1 182 aaPredicted RBP23.06■■□□□ 1.28
USP39-204ENST00000409766 EYA3Q99504 573 aa23.06■■□□□ 1.28
USP39-204ENST00000409766 WNT7AO00755 349 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 NLRP5P59047 1200 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 FOXP4Q8IVH2 680 aaPredicted RBP23.05■■□□□ 1.28
USP39-204ENST00000409766 NEDD1Q8NHV4 660 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 FBXO41Q8TF61 875 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 CSRNP2Q9H175 543 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 CLIP2Q9UDT6 1046 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 NRBP1Q9UHY1 535 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 STX8Q9UNK0 236 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 RGPD3A6NKT7 1758 aaPredicted RBP23.05■■□□□ 1.28
USP39-204ENST00000409766 RGPD4Q7Z3J3 1758 aa23.05■■□□□ 1.28
USP39-204ENST00000409766 BMP15O95972 392 aa23.04■■□□□ 1.28
USP39-204ENST00000409766 CCDC186Q7Z3E2 898 aa23.04■■□□□ 1.28
USP39-204ENST00000409766 SH3GLB2Q9NR46 395 aa23.04■■□□□ 1.28
USP39-204ENST00000409766 PALM3A6NDB9 673 aaPredicted RBP23.03■■□□□ 1.28
USP39-204ENST00000409766 POLR2DO15514 142 aaKnown RBP23.03■■□□□ 1.28
USP39-204ENST00000409766 SLC35G1Q2M3R5 365 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 CALML3P27482 149 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 NOLC1Q14978 699 aaKnown RBP eCLIP23.03■■□□□ 1.28
USP39-204ENST00000409766 NCAPHQ15003 741 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 TTC38Q5R3I4 469 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 ISM2Q6H9L7 571 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 USP49Q70CQ1 688 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 KIAA1524Q8TCG1 905 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 PCDHA5Q9Y5H7 936 aa23.03■■□□□ 1.28
USP39-204ENST00000409766 ADAMTS3O15072 1205 aa23.02■■□□□ 1.28
USP39-204ENST00000409766 FOXN1O15353 648 aa23.02■■□□□ 1.28
USP39-204ENST00000409766 CYTH3O43739 400 aa23.02■■□□□ 1.28
USP39-204ENST00000409766 TRAPPC10P48553 1259 aa23.02■■□□□ 1.28
USP39-204ENST00000409766 DOK7Q18PE1 504 aa23.02■■□□□ 1.28
USP39-204ENST00000409766 FERMT2Q96AC1 680 aa23.02■■□□□ 1.28
USP39-204ENST00000409766 HOOK1Q9UJC3 728 aaKnown RBP23.02■■□□□ 1.28
USP39-204ENST00000409766 IKBKBO14920 756 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 NOVP48745 357 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 ZNF174Q15697 407 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 MSL1Q68DK7 614 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 SPTLC3Q9NUV7 552 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 SERTAD1Q9UHV2 236 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 PYCARDQ9ULZ3 195 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 SMTNL1A8MU46 457 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 F8W031 263 aaPredicted RBP23.01■■□□□ 1.27
USP39-204ENST00000409766 PIK3AP1Q6ZUJ8 805 aa23.01■■□□□ 1.27
USP39-204ENST00000409766 GPKOWQ92917 476 aaPredicted RBP eCLIP23.01■■□□□ 1.27
USP39-204ENST00000409766 TTF2Q9UNY4 1162 aaKnown RBP23.01■■□□□ 1.27
USP39-204ENST00000409766 ACTN4O43707 911 aaKnown RBP23■■□□□ 1.27
USP39-204ENST00000409766 ATP2C1P98194 919 aaPredicted RBP23■■□□□ 1.27
USP39-204ENST00000409766 POSTNQ15063 836 aa23■■□□□ 1.27
USP39-204ENST00000409766 CCDC144BQ3MJ40 725 aa23■■□□□ 1.27
USP39-204ENST00000409766 BLIDQ8IZY5 108 aa23■■□□□ 1.27
USP39-204ENST00000409766 C17orf53Q8N3J3 647 aaPredicted RBP23■■□□□ 1.27
USP39-204ENST00000409766 LZTS2Q9BRK4 669 aa23■■□□□ 1.27
USP39-204ENST00000409766 MXD3Q9BW11 206 aa23■■□□□ 1.27
USP39-204ENST00000409766 TMX4Q9H1E5 349 aaPredicted RBP23■■□□□ 1.27
USP39-204ENST00000409766 NT5DC1Q5TFE4 455 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 TYW1BQ6NUM6 668 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 CEP95Q96GE4 821 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 PCDHA4Q9UN74 947 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 GABPAQ06546 454 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 PTGDRQ13258 359 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 PDILTQ8N807 584 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 MTMR7Q9Y216 660 aa22.99■■□□□ 1.27
USP39-204ENST00000409766 PICALMQ13492 652 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 KANK3Q6NY19 840 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 ZNF622Q969S3 477 aaKnown RBP eCLIP22.98■■□□□ 1.27
USP39-204ENST00000409766 EPSTI1Q96J88 318 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 DDX4Q9NQI0 724 aaKnown RBP22.98■■□□□ 1.27
USP39-204ENST00000409766 ADAMTSL1Q8N6G6 1762 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 KLRF2D3W0D1 207 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 M0R2N6 131 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 GOLGA8HP0CJ92 632 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 TOP1P11387 765 aaKnown RBP22.98■■□□□ 1.27
USP39-204ENST00000409766 BMP6P22004 513 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 SARSP49591 514 aaKnown RBP22.98■■□□□ 1.27
USP39-204ENST00000409766 WWC2Q6AWC2 1192 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 SPZ1Q9BXG8 430 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 HSD3B7Q9H2F3 369 aa22.98■■□□□ 1.27
USP39-204ENST00000409766 PLIN4Q96Q06 1357 aa22.97■■□□□ 1.27
USP39-204ENST00000409766 A0A087X0B3 334 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms