RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PPARAQ07869 468 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 EMBQ6PCB8 327 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 INTS8Q75QN2 995 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 VPS36Q86VN1 386 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 RNF10Q8N5U6 811 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 MSANTD4Q8NCY6 345 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 TRIM7Q9C029 511 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 NOVA2Q9UNW9 492 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 PPP6R2O75170 966 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 FGFR1OPO95684 399 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 LSP1P33241 339 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 APBA1Q02410 837 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 CRYMQ14894 314 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 KSR1Q8IVT5 923 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC13Q8IYE1 715 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 KLHL29Q96CT2 875 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 HVCN1Q96D96 273 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 TSG101Q99816 390 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 ABHD10Q9NUJ1 306 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 TCP11L1Q9NUJ3 509 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 NOP53Q9NZM5 478 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 YTHDC2Q9H6S0 1430 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 A0A1W2PRG0 241 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 FMR1Q06787 632 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 SLC39A6Q13433 755 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 POLA2Q14181 598 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 SETDB1Q15047 1291 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 CCNI2Q6ZMN8 369 aaPredicted RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 PYM1Q9BRP8 204 aaKnown RBP10.34□□□□□ -0.75
COL28A1-201ENST00000399429 TAOK3Q9H2K8 898 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 LRP2BPQ9P2M1 347 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 LRWD1Q9UFC0 647 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 ABCF2Q9UG63 623 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 LUC7L3O95232 432 aaKnown RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 SETSIPP0DME0 302 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 PDHBP11177 359 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 TCERG1LQ5VWI1 586 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 SPTY2D1Q68D10 685 aaPredicted RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 RRAGAQ7L523 313 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 KCNV2Q8TDN2 545 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 LRRC1Q9BTT6 524 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 DSCC1Q9BVC3 393 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 DDX21Q9NR30 783 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 MOCS3O95396 460 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 BMP15O95972 392 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 ZFYP08048 801 aaPredicted RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 PDE4BQ07343 736 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 MUM1Q2TAK8 710 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 DPH5Q9H2P9 285 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 DBNLQ9UJU6 430 aaKnown RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 TFR2Q9UP52 801 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 REREQ9P2R6 1566 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 ABCC1P33527 1531 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 ATP10AO60312 1499 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 TCHHQ07283 1943 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 GMNCA6NCL1 334 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 USP5P45974 858 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 FXR1P51114 621 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 NBPF9Q3BBW0 867 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 LRRC23Q53EV4 343 aaPredicted RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 RASIP1Q5U651 963 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 CHP1Q99653 195 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 CSRNP2Q9H175 543 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 EPN3Q9H201 632 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 NLRC4Q9NPP4 1024 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 BMP2KQ9NSY1 1161 aaPredicted RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 CETN3O15182 167 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 SASH1O94885 1247 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 CHGBP05060 677 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 HDLBPQ00341 1268 aaKnown RBP10.33□□□□□ -0.76
COL28A1-201ENST00000399429 KRT31Q15323 416 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 NAA35Q5VZE5 725 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 CYB5D1Q6P9G0 228 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 SHC4Q6S5L8 630 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 CATIPQ7Z7H3 387 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 PPFIBP2Q8ND30 876 aa10.33□□□□□ -0.76
COL28A1-201ENST00000399429 KCNK3O14649 394 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 KIF3CO14782 793 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 PDHA1P08559 390 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 EHHADHQ08426 723 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 NCAPHQ15003 741 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 DAAM2Q86T65 1068 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 METTL16Q86W50 562 aaKnown RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 PROSER2Q86WR7 435 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 CCDC26Q8TAB7 109 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 CTNNBL1Q8WYA6 563 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 ZKSCAN4Q969J2 545 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 NUP58Q9BVL2 599 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 LGR6Q9HBX8 967 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 FAM53CQ9NYF3 392 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 PLAAQ9Y263 795 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 B4DLN1 442 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 KCNQ3O43525 872 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 DIAPH2O60879 1101 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 GPTP24298 496 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 KRT2P35908 639 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 RAPGEF1Q13905 1077 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 IFI16Q16666 785 aaKnown RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 ANKRD42Q8N9B4 389 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 IL17REQ8NFR9 667 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms