RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 ZBTB10Q96DT7 871 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 CHAMP1Q96JM3 812 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 FAM167BQ9BTA0 163 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 KCNH3Q9ULD8 1083 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 PNMA6EA0A0J9YXQ4 647 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 TSPAN9O75954 239 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 BICC1Q9H694 974 aaKnown RBP10.59□□□□□ -0.71
SMAD9-203ENST00000399275 RTN1Q16799 776 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 MPRIPQ6WCQ1 1025 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 CCDC82Q8N4S0 544 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 ZNF653Q96CK0 615 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 DBNLQ9UJU6 430 aaKnown RBP10.59□□□□□ -0.71
SMAD9-203ENST00000399275 PA2G4Q9UQ80 394 aaKnown RBP10.59□□□□□ -0.71
SMAD9-203ENST00000399275 ANGPTL3Q9Y5C1 460 aa10.59□□□□□ -0.71
SMAD9-203ENST00000399275 ERVK-7P63135 1459 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 E9PMD0 336 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 STAT6P42226 847 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 OCA2Q04671 838 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 FBXO38Q6PIJ6 1188 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 MPP4Q96JB8 637 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 GDAP1L1Q96MZ0 367 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 PARVBQ9HBI1 364 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 POLE3Q9NRF9 147 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 MAP3K5Q99683 1374 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 CLCN6P51797 869 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 WTAPQ15007 396 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 SEPT2Q15019 361 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 OLFM3Q96PB7 478 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 SH3GL1Q99961 368 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 NDC80O14777 642 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 CHGBP05060 677 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 GNAT2P19087 354 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 SERPINB6P35237 376 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 IL15P40933 162 aaPredicted RBP10.58□□□□□ -0.72
SMAD9-203ENST00000399275 MTX1Q13505 466 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 SARM1Q6SZW1 724 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.58□□□□□ -0.72
SMAD9-203ENST00000399275 ETAA1Q9NY74 926 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 REREQ9P2R6 1566 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 PTCH1Q13635 1447 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 ACEP12821 1306 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 HNRNPCL2B2RXH8 293 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 HNRNPCL1O60812 293 aaKnown RBP10.58□□□□□ -0.72
SMAD9-203ENST00000399275 TRPA1O75762 1119 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 DMPKQ09013 629 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 RILPL1Q5EBL4 403 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 TRIML2Q8N7C3 387 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 CARD10Q9BWT7 1032 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 FLT4P35916 1363 aa10.58□□□□□ -0.72
SMAD9-203ENST00000399275 TSPY2A6NKD2 308 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 NBPF26B4DH59 902 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 PDHA1P08559 390 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 HOXB7P09629 217 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 TSPY3P0CV98 308 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 TSPY8P0CW00 308 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 PSMC1P62191 440 aaKnown RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 TSPY1Q01534 308 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 TMEM132AQ24JP5 1023 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 NBPF14Q5TI25 921 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 ZNF449Q6P9G9 518 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 CCDC125Q86Z20 511 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 KIAA0825Q8IV33 1275 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 NBPF15Q8N660 670 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 ZRANB1Q9UGI0 708 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 EDC4Q6P2E9 1401 aaKnown RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 ACTN4O43707 911 aaKnown RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 STX10O60499 249 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 MRPS9P82933 396 aaKnown RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 MYO1EQ12965 1108 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 NLRP7Q8WX94 980 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 DYDC2Q96IM9 177 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 LSG1Q9H089 658 aaKnown RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 TMEM51Q9NW97 253 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 CD109Q6YHK3 1445 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 DNAJC6O75061 913 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 CYP2E1P05181 493 aaPredicted RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 KRT8P05787 483 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 STX2P32856 288 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 PPP1R2P41236 205 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 UBE3BQ7Z3V4 1068 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 HEATR3Q7Z4Q2 680 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 RSPH3Q86UC2 560 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 PDZD8Q8NEN9 1154 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 MINDY4BA8MYZ0 360 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 SUN1O94901 812 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 USHBP1Q8N6Y0 703 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 SSH3Q8TE77 659 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 ANKRD7Q92527 254 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 OMA1Q96E52 524 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 ZNF287Q9HBT7 754 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 SEC63Q9UGP8 760 aaKnown RBP10.57□□□□□ -0.72
SMAD9-203ENST00000399275 TPCN1Q9ULQ1 816 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 SYNRGQ9UMZ2 1314 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 A0A1W2PQ27 194 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 A0A1W2PQ64 194 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 A0A1W2PQD8 194 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 ARHGAP10A1A4S6 786 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 RHOBTB1O94844 696 aa10.57□□□□□ -0.72
SMAD9-203ENST00000399275 PNMA6AP0CW24 399 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms