RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SCLT1Q96NL6 688 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 GOLGA6AQ9NYA3 693 aa12.04□□□□□ -0.48
CCDC40-204ENST00000397545 USP42Q9H9J4 1324 aaKnown RBP12.04□□□□□ -0.48
CCDC40-204ENST00000397545 DCAF8L1A6NGE4 600 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 CCNT1O60563 726 aaKnown RBP12.03□□□□□ -0.48
CCDC40-204ENST00000397545 TUBB4BP68371 445 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 ZSCAN26Q16670 478 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 NOSTRINQ8IVI9 506 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 ZNF654Q8IZM8 581 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 NSUN7Q8NE18 718 aaKnown RBP12.03□□□□□ -0.48
CCDC40-204ENST00000397545 SMARCC2Q8TAQ2 1214 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 MED1Q15648 1581 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-204ENST00000397545 SEC31AO94979 1220 aaKnown RBP12.03□□□□□ -0.48
CCDC40-204ENST00000397545 NECTIN1Q15223 517 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 KLHL7Q8IXQ5 586 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 SPATA5Q8NB90 893 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 BICD1Q96G01 975 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 ZBTB21Q9ULJ3 1066 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 HS2ST1Q7LGA3 356 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 FBF1Q8TES7 1133 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 LPIN2Q92539 896 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 ASAP1Q9ULH1 1129 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 RGPD5Q99666 1765 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 PDE8AO60658 829 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 PLCB3Q01970 1234 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 TPTE2Q6XPS3 522 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 NELFCDQ8IXH7 590 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 AIFM3Q96NN9 605 aa12.03□□□□□ -0.48
CCDC40-204ENST00000397545 RBM28Q9NW13 759 aaKnown RBP12.03□□□□□ -0.48
CCDC40-204ENST00000397545 UTYO14607 1347 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 SPDYE3A6NKU9 549 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 USP17L12C9JPN9 530 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 USP17L21D6R901 530 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 PLCD1P51178 756 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 TNNC1P63316 161 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 ARFGAP2Q8N6H7 521 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 ANKRD13CQ8N6S4 541 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 PKD2L1Q9P0L9 805 aa12.02□□□□□ -0.48
CCDC40-204ENST00000397545 PDE6AP16499 860 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 TYW1BQ6NUM6 668 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 SECISBP2LQ93073 1101 aaKnown RBP12.02□□□□□ -0.49
CCDC40-204ENST00000397545 ADAMTSL3P82987 1691 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 GOLGA6BA6NDN3 693 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 PARP1P09874 1014 aaKnown RBP12.02□□□□□ -0.49
CCDC40-204ENST00000397545 CCDC172P0C7W6 258 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 FCHSD1Q86WN1 690 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 SMYD4Q8IYR2 804 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-204ENST00000397545 GRAMD1CQ8IYS0 662 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 KCNK9Q9NPC2 374 aa12.02□□□□□ -0.49
CCDC40-204ENST00000397545 KDM4FA0A1W2PPD8 638 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 FAM13AO94988 1023 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 KIF4AO95239 1232 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 RFX5P48382 616 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 GIGYF2Q6Y7W6 1299 aaKnown RBP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 TEX11Q8IYF3 940 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 ATP1A3P13637 1013 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 EEF2P13639 858 aaKnown RBP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 HERC4Q5GLZ8 1057 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 GPR161Q8N6U8 529 aaKnown RBP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 NF2P35240 595 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 TFAP4Q01664 338 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 TCIRG1Q13488 830 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 MSL1Q68DK7 614 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 C2CD5Q86YS7 1000 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 SYNE4Q8N205 404 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 PPP1R13BQ96KQ4 1090 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 ZC3H12CQ9C0D7 883 aaKnown RBP12.01□□□□□ -0.49
CCDC40-204ENST00000397545 OVOS2A0A0G2JMS6 1433 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 KDM3BQ7LBC6 1761 aa12.01□□□□□ -0.49
CCDC40-204ENST00000397545 CEP104O60308 925 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 HIBADHP31937 336 aaKnown RBP12□□□□□ -0.49
CCDC40-204ENST00000397545 SP4Q02446 784 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 RRAGAQ7L523 313 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 IFNL3Q8IZI9 196 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 LMBR1Q8WVP7 490 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 LRWD1Q9UFC0 647 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 APBA3O96018 575 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 ARID4AP29374 1257 aaPredicted RBP12□□□□□ -0.49
CCDC40-204ENST00000397545 RBM6P78332 1123 aaKnown RBP12□□□□□ -0.49
CCDC40-204ENST00000397545 FANCBQ8NB91 859 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 OR8K1Q8NGG5 319 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 RCOR1Q9UKL0 485 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 LMO7Q8WWI1 1683 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 GNPATO15228 680 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 DESP17661 470 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 BCAMP50895 628 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 PPP4R3AQ6IN85 833 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 PLVAPQ9BX97 442 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 HOMER2Q9NSB8 354 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 SAR1BQ9Y6B6 198 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 ZNF142P52746 1687 aaPredicted RBP12□□□□□ -0.49
CCDC40-204ENST00000397545 RPAP1Q9BWH6 1393 aaPredicted RBP12□□□□□ -0.49
CCDC40-204ENST00000397545 ERVV-2B6SEH9 535 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 ENC1O14682 589 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 NEBLO76041 1014 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 PHKA1P46020 1223 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 TRIM14Q14142 442 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 LRP10Q7Z4F1 713 aa12□□□□□ -0.49
CCDC40-204ENST00000397545 SNX29Q8TEQ0 813 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms