RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 CCDC82Q8N4S0 544 aa14.4□□□□□ -0.1
CIITA-202ENST00000381835 PNMA1Q8ND90 353 aa14.4□□□□□ -0.1
CIITA-202ENST00000381835 TMEM47Q9BQJ4 181 aa14.4□□□□□ -0.1
CIITA-202ENST00000381835 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.4□□□□□ -0.1
CIITA-202ENST00000381835 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.4□□□□□ -0.1
CIITA-202ENST00000381835 POLR2AP24928 1970 aaKnown RBP14.4□□□□□ -0.1
CIITA-202ENST00000381835 DYNC1I1O14576 645 aa14.4□□□□□ -0.11
CIITA-202ENST00000381835 LMOD1P29536 600 aaPredicted RBP14.4□□□□□ -0.11
CIITA-202ENST00000381835 FOSBP53539 338 aa14.4□□□□□ -0.11
CIITA-202ENST00000381835 SHROOM1Q2M3G4 852 aaPredicted RBP14.4□□□□□ -0.11
CIITA-202ENST00000381835 TATDN1Q6P1N9 297 aa14.4□□□□□ -0.11
CIITA-202ENST00000381835 METTL16Q86W50 562 aaKnown RBP14.4□□□□□ -0.11
CIITA-202ENST00000381835 CMTR1Q8N1G2 835 aaKnown RBP14.4□□□□□ -0.11
CIITA-202ENST00000381835 ANKS1AQ92625 1134 aa14.4□□□□□ -0.11
CIITA-202ENST00000381835 PHKBQ93100 1093 aa14.4□□□□□ -0.11
CIITA-202ENST00000381835 CCDC17Q96LX7 622 aa14.4□□□□□ -0.11
CIITA-202ENST00000381835 PLIN4Q96Q06 1357 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 CDKL5O76039 1030 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 DDAH1O94760 285 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 GDF11O95390 407 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 CALM1P0DP23 149 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 CALM2P0DP24 149 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 CALM3P0DP25 149 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 FDPSP14324 419 aaKnown RBP14.39□□□□□ -0.11
CIITA-202ENST00000381835 PDCP20941 246 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 RCAN1P53805 252 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 UVSSAQ2YD98 709 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 CCDC183Q5T5S1 534 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 ANGEL2Q5VTE6 544 aaKnown RBP14.39□□□□□ -0.11
CIITA-202ENST00000381835 DPY19L2Q6NUT2 758 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 MIGA2Q7L4E1 593 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 MTMR4Q9NYA4 1195 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 ORC3Q9UBD5 711 aaPredicted RBP14.39□□□□□ -0.11
CIITA-202ENST00000381835 HERC5Q9UII4 1024 aaKnown RBP14.39□□□□□ -0.11
CIITA-202ENST00000381835 TAOK2Q9UL54 1235 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 TCHHQ07283 1943 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 NID2Q14112 1375 aa14.39□□□□□ -0.11
CIITA-202ENST00000381835 CCDC196A0A1B0GTZ2 297 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 NTRK3Q16288 839 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 TPRNQ4KMQ1 711 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 MYH4Q9Y623 1939 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 HIRAP54198 1017 aaPredicted RBP14.38□□□□□ -0.11
CIITA-202ENST00000381835 ATP2B2Q01814 1243 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 DNTTIP2Q5QJE6 756 aaKnown RBP14.38□□□□□ -0.11
CIITA-202ENST00000381835 TMEM87AQ8NBN3 555 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 CTCFLQ8NI51 663 aaPredicted RBP14.38□□□□□ -0.11
CIITA-202ENST00000381835 CLIP2Q9UDT6 1046 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 CNPY2Q9Y2B0 182 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 KIF3AQ9Y496 699 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 MYH6P13533 1939 aa14.38□□□□□ -0.11
CIITA-202ENST00000381835 IGKV6D-41A0A0C4DH26 115 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 LETM1O95202 739 aaPredicted RBP14.37□□□□□ -0.11
CIITA-202ENST00000381835 ZSCAN22P10073 491 aaPredicted RBP14.37□□□□□ -0.11
CIITA-202ENST00000381835 ABCB5Q2M3G0 1257 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 SLC26A6Q9BXS9 759 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 DEFB129Q9H1M3 183 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 MTMR6Q9Y217 621 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 GREB1LQ9C091 1923 aaPredicted RBP14.37□□□□□ -0.11
CIITA-202ENST00000381835 TOP1P11387 765 aaKnown RBP14.37□□□□□ -0.11
CIITA-202ENST00000381835 IFNAR1P17181 557 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 GGA3Q9NZ52 723 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 PGAP2Q9UHJ9 254 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 USP25Q9UHP3 1055 aa14.37□□□□□ -0.11
CIITA-202ENST00000381835 H3BQV1 296 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 PLEKHA8P1O95397 391 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 TTLL1O95922 423 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 SSRP1Q08945 709 aaKnown RBP14.36□□□□□ -0.11
CIITA-202ENST00000381835 RRP1BQ14684 758 aaKnown RBP14.36□□□□□ -0.11
CIITA-202ENST00000381835 SEPT2Q15019 361 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 PPP2R5BQ15173 497 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 IFFO2Q5TF58 517 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 CDC37L1Q7L3B6 337 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 LRRC47Q8N1G4 583 aaKnown RBP14.36□□□□□ -0.11
CIITA-202ENST00000381835 RBM28Q9NW13 759 aaKnown RBP14.36□□□□□ -0.11
CIITA-202ENST00000381835 UBE2Q2LH0YL09 131 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 GH2P01242 217 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 NOVP48745 357 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 UBE2HP62256 183 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 RASGRP2Q7LDG7 609 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 MTERF4Q7Z6M4 381 aaKnown RBP14.36□□□□□ -0.11
CIITA-202ENST00000381835 TEPSINQ96N21 525 aa14.36□□□□□ -0.11
CIITA-202ENST00000381835 ADARB2Q9NS39 739 aaKnown RBP14.36□□□□□ -0.11
CIITA-202ENST00000381835 KIF5BP33176 963 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 JAG1P78504 1218 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 GUCY1B3Q02153 619 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 PRAMEF18Q5VWM3 479 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 TMEM179Q6ZVK1 233 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 FERMT3Q86UX7 667 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 APOBEC3FQ8IUX4 373 aaKnown RBP14.35□□□□□ -0.11
CIITA-202ENST00000381835 TRIM22Q8IYM9 498 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 AIFM3Q96NN9 605 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 CABP5Q9NP86 173 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 TBC1D12O60347 775 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 FMNL1O95466 1100 aaPredicted RBP14.35□□□□□ -0.11
CIITA-202ENST00000381835 ADCY5O95622 1261 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 TMTC3Q6ZXV5 915 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 STAG2Q8N3U4 1231 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 ZNF830Q96NB3 372 aaPredicted RBP14.35□□□□□ -0.11
CIITA-202ENST00000381835 KANSL2Q9H9L4 492 aa14.35□□□□□ -0.11
CIITA-202ENST00000381835 ATP6V1DQ9Y5K8 247 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms