RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 AFF2P51816 1311 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 CALM1P0DP23 149 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 CALM2P0DP24 149 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 CALM3P0DP25 149 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 ZNF18P17022 549 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 SH3RF1Q7Z6J0 888 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 GPKOWQ92917 476 aaPredicted RBP eCLIP15.3■□□□□ 0.04
CCDC3-202ENST00000378839 SCG2P13521 617 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 AFMP43652 599 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 PFKFB3Q16875 520 aaPredicted RBP15.29■□□□□ 0.04
CCDC3-202ENST00000378839 PIK3AP1Q6ZUJ8 805 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 STAMQ92783 540 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 PAGE5Q96GU1 130 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 SAMSN1Q9NSI8 373 aaKnown RBP15.29■□□□□ 0.04
CCDC3-202ENST00000378839 SERPINC1P01008 464 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 LDHBP07195 334 aaKnown RBP15.29■□□□□ 0.04
CCDC3-202ENST00000378839 CBX1P83916 185 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 NCBP1Q09161 790 aaKnown RBP15.29■□□□□ 0.04
CCDC3-202ENST00000378839 PTGDRQ13258 359 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 OLFM4Q6UX06 510 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 VSTM4Q8IW00 320 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 TGFBRAP1Q8WUH2 860 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 MTRQ99707 1265 aa15.29■□□□□ 0.04
CCDC3-202ENST00000378839 TTC38Q5R3I4 469 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 SMYD4Q8IYR2 804 aaPredicted RBP15.28■□□□□ 0.04
CCDC3-202ENST00000378839 CNBD1Q8NA66 436 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 CTCFLQ8NI51 663 aaPredicted RBP15.28■□□□□ 0.04
CCDC3-202ENST00000378839 RASGRP4Q8TDF6 673 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 ANKRD7Q92527 254 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 SMARCE1Q969G3 411 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 PPP1R13BQ96KQ4 1090 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 SAP30BPQ9UHR5 308 aaKnown RBP15.28■□□□□ 0.04
CCDC3-202ENST00000378839 CEP131Q9UPN4 1083 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 NPHP1O15259 732 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 FANCGO15287 622 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 CYTH3O43739 400 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 CFAP100Q494V2 611 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 TMEM139Q8IV31 216 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 TMX1Q9H3N1 280 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 MAD2L2Q9UI95 211 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 NFE2L3Q9Y4A8 694 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 MORC2Q9Y6X9 1032 aaPredicted RBP15.28■□□□□ 0.04
CCDC3-202ENST00000378839 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.28■□□□□ 0.04
CCDC3-202ENST00000378839 VWA3AA6NCI4 1184 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 COBLO75128 1261 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 KCNA4P22459 653 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 TPM4P67936 248 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 DPYDQ12882 1025 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 PTPN14Q15678 1187 aa15.28■□□□□ 0.04
CCDC3-202ENST00000378839 RTFDC1Q9BY42 306 aaPredicted RBP15.28■□□□□ 0.04
CCDC3-202ENST00000378839 XBP1P17861 261 aa15.27■□□□□ 0.04
CCDC3-202ENST00000378839 SFPQP23246 707 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCDC3-202ENST00000378839 ATP2C1P98194 919 aaPredicted RBP15.27■□□□□ 0.04
CCDC3-202ENST00000378839 MAPKAPK5Q8IW41 473 aa15.27■□□□□ 0.04
CCDC3-202ENST00000378839 C4orf32Q8N8J7 132 aa15.27■□□□□ 0.04
CCDC3-202ENST00000378839 CCDC150Q8NCX0 1101 aa15.27■□□□□ 0.04
CCDC3-202ENST00000378839 GJD4Q96KN9 370 aaPredicted RBP15.27■□□□□ 0.04
CCDC3-202ENST00000378839 CPVLQ9H3G5 476 aa15.27■□□□□ 0.04
CCDC3-202ENST00000378839 ZBTB22O15209 634 aa15.27■□□□□ 0.03
CCDC3-202ENST00000378839 USP5P45974 858 aa15.27■□□□□ 0.03
CCDC3-202ENST00000378839 APTXQ7Z2E3 356 aaKnown RBP15.27■□□□□ 0.03
CCDC3-202ENST00000378839 LEMD3Q9Y2U8 911 aa15.27■□□□□ 0.03
CCDC3-202ENST00000378839 XDHP47989 1333 aa15.27■□□□□ 0.03
CCDC3-202ENST00000378839 SLFN14P0C7P3 912 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 GYS1P13807 737 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 CDC25AP30304 524 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 NLRP5P59047 1200 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 E2F4Q16254 413 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 M0R2N6 131 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 MCM7P33993 719 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 TBX2Q13207 712 aaPredicted RBP15.26■□□□□ 0.03
CCDC3-202ENST00000378839 PNMA1Q8ND90 353 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 ENOX1Q8TC92 643 aaKnown RBP15.26■□□□□ 0.03
CCDC3-202ENST00000378839 MTMR7Q9Y216 660 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 ROBO3Q96MS0 1386 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 CDK5RAP2Q96SN8 1893 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 CUL4BQ13620 913 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 CRY2Q49AN0 593 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 SPTY2D1Q68D10 685 aaPredicted RBP15.26■□□□□ 0.03
CCDC3-202ENST00000378839 MLKLQ8NB16 471 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 WDR66Q8TBY9 1149 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 PAXBP1Q9Y5B6 917 aa15.26■□□□□ 0.03
CCDC3-202ENST00000378839 PPP4CP60510 307 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 ANKS1AQ92625 1134 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 CD209Q9NNX6 404 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 RASA1P20936 1047 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 LRRN4CLQ8ND94 238 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 BLZF1Q9H2G9 400 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 KAT14Q9H8E8 782 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 POLLQ9UGP5 575 aa15.25■□□□□ 0.03
CCDC3-202ENST00000378839 DDX60LQ5H9U9 1706 aaKnown RBP15.24■□□□□ 0.03
CCDC3-202ENST00000378839 GOLGA8HP0CJ92 632 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 STX17P56962 302 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 PDXDC2PQ6P474 469 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 DGKHQ86XP1 1220 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 FERMT2Q96AC1 680 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 TRPC5Q9UL62 973 aaPredicted RBP15.24■□□□□ 0.03
CCDC3-202ENST00000378839 UBR3Q6ZT12 1888 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 SNED1Q8TER0 1413 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 PPP1R3GB7ZBB8 358 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms