RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CABP7Q86V35 215 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 POTEDQ86YR6 584 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 TPCN1Q9ULQ1 816 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 CCDC169A6NNP5 214 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 CMA1P23946 247 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 SLC1A4P43007 532 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 EIF6P56537 245 aaKnown RBP12.7□□□□□ -0.38
PTPRF-203ENST00000372407 NOSTRINQ8IVI9 506 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 SEPT12Q8IYM1 358 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 RSRC1Q96IZ7 334 aaKnown RBP12.7□□□□□ -0.38
PTPRF-203ENST00000372407 CABS1Q96KC9 395 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 TRIM31Q9BZY9 425 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 CTTNBP2NLQ9P2B4 639 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 CCDC160A6NGH7 325 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 PKP1Q13835 747 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 LONRF3Q496Y0 759 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 REXO1Q8N1G1 1221 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 PSMB7Q99436 277 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 SAR1BQ9Y6B6 198 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 CHMP2AO43633 222 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 TFAP4Q01664 338 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 TCIRG1Q13488 830 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 PNOCQ13519 176 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 BRD3Q15059 726 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 CLUL1Q15846 466 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 DAAM2Q86T65 1068 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 MAK16Q9BXY0 300 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 IFIH1Q9BYX4 1025 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 PKD2L1Q9P0L9 805 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 E9PCH4 1651 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 DKC1O60832 514 aaKnown RBP eCLIP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 ADKP55263 362 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 RBM6P78332 1123 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 LIN9Q5TKA1 542 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 hCG_1642624A0A1W2PR95 340 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 OAS2P29728 719 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 ADD1P35611 737 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 LRMPQ12912 555 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 CALCRLQ16602 461 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 PAXIP1Q6ZW49 1069 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 KLHL7Q8IXQ5 586 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 TRIML1Q8N9V2 468 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 IL17REQ8NFR9 667 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 RBM17Q96I25 401 aaKnown RBP12.69□□□□□ -0.38
PTPRF-203ENST00000372407 EXOC7Q9UPT5 735 aa12.69□□□□□ -0.38
PTPRF-203ENST00000372407 GAS2L3Q86XJ1 694 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ARHGEF10LQ9HCE6 1279 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 FAM207AQ9NSI2 230 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ASIC3Q9UHC3 531 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 GGA1Q9UJY5 639 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 MAST3O60307 1309 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ERVV-2B6SEH9 535 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 EXOC3O60645 756 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 CFAP157Q5JU67 520 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 RBM26Q5T8P6 1007 aaKnown RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 SFMBT2Q5VUG0 894 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 PEX26Q7Z412 305 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 SYCE1Q8N0S2 351 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ZNF215Q9UL58 517 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 KDM5AP29375 1690 aaKnown RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 FER1L4A9Z1Z3 1794 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 A0A1B0GUA9 196 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 HARSP12081 509 aaKnown RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ARHGAP25P42331 645 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ERCC6LQ2NKX8 1250 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 NCAPH2Q6IBW4 605 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 RRAGAQ7L523 313 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 APBB1IPQ7Z5R6 666 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 FAM204AQ9H8W3 233 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 STAP2Q9UGK3 403 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 ANAPC4Q9UJX5 808 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 AGTPBP1Q9UPW5 1226 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 HSPD1P10809 573 aaKnown RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 PSMC4P43686 418 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 WHAMMP3Q1A5X7 153 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 STMN2Q93045 179 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 BLZF1Q9H2G9 400 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 NLRC4Q9NPP4 1024 aa12.68□□□□□ -0.38
PTPRF-203ENST00000372407 MKRN1Q9UHC7 482 aaKnown RBP12.68□□□□□ -0.38
PTPRF-203ENST00000372407 NELFCDQ8IXH7 590 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 NT5C3AQ9H0P0 336 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 SPATA31A6Q5VVP1 1343 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 USP17L12C9JPN9 530 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 USP17L21D6R901 530 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 ERCC3P19447 782 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 UAP1Q16222 522 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-203ENST00000372407 C2CD5Q86YS7 1000 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 FBXO18Q8NFZ0 1043 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 TRIM58Q8NG06 486 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 GPT2Q8TD30 523 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 DDX41Q9UJV9 622 aaKnown RBP12.67□□□□□ -0.38
PTPRF-203ENST00000372407 PIK3C2BO00750 1634 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 C1orf167Q5SNV9 1468 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 TRIM37O94972 964 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 BCRP11274 1271 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 DNM2P50570 870 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 MTMR3Q13615 1198 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 TAOK1Q7L7X3 1001 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 TRMT2AQ8IZ69 625 aaKnown RBP12.67□□□□□ -0.38
PTPRF-203ENST00000372407 FANCBQ8NB91 859 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms