RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 TRIM58Q8NG06 486 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 KIAA1524Q8TCG1 905 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 SPC25Q9HBM1 224 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 MYO1AQ9UBC5 1043 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 CHD1O14646 1710 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 FLOT1O75955 427 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 SLC39A14Q15043 492 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PPP1R7Q15435 360 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 OR8K1Q8NGG5 319 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 MAIP1Q8WWC4 291 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 CFAP57Q96MR6 1250 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 TRERF1Q96PN7 1200 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 ATP8A2Q9NTI2 1148 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 TMOD4Q9NZQ9 345 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PDE6AP16499 860 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 LTKP29376 864 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 MAGEA1P43355 309 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 SCRN1Q12765 414 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 ARHGEF6Q15052 776 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 SFMBT2Q5VUG0 894 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 DNAJC10Q8IXB1 793 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 MICALL1Q8N3F8 863 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 SMC1BQ8NDV3 1235 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 PLCB1Q9NQ66 1216 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 UFL1O94874 794 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 U2AF2P26368 475 aaKnown RBP eCLIP10□□□□□ -0.81
SYNE1-205ENST00000367251 ETF1P62495 437 aaKnown RBP10□□□□□ -0.81
SYNE1-205ENST00000367251 GAS2L3Q86XJ1 694 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 SNX29Q8TEQ0 813 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 SELENOSQ9BQE4 189 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 TAB2Q9NYJ8 693 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 GOLGA6CA6NDK9 693 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 GOLGA6DP0CG33 693 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 GTF2A1P52655 376 aaPredicted RBP10□□□□□ -0.81
SYNE1-205ENST00000367251 DCAF17Q5H9S7 520 aaPredicted RBP10□□□□□ -0.81
SYNE1-205ENST00000367251 CLEC17AQ6ZS10 378 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 PLIN2Q99541 437 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 GOLGA6AQ9NYA3 693 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 DNM3Q9UQ16 869 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 RPAP1Q9BWH6 1393 aaPredicted RBP10□□□□□ -0.81
SYNE1-205ENST00000367251 SETDB1Q15047 1291 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 WDR44Q5JSH3 913 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 CCDC50Q8IVM0 306 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 BLIDQ8IZY5 108 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 GSDMBQ8TAX9 411 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 HAUS4Q9H6D7 363 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 RCOR1Q9UKL0 485 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 PPP2R2CQ9Y2T4 447 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 MAP3K15Q6ZN16 1313 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 LMTK2Q8IWU2 1503 aa10□□□□□ -0.81
SYNE1-205ENST00000367251 KCNJ18B7U540 433 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 MYL1P05976 194 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 ALDH3A1P30838 453 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 TXKP42681 527 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 SLC8A3P57103 927 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 KCNJ12Q14500 433 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 KCNJ14Q9UNX9 436 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 RIMBP2O15034 1052 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 GNPATO15228 680 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 TRIM37O94972 964 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 FGAP02671 866 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 GJC1P36383 396 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 LIN9Q5TKA1 542 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 TMED8Q6PL24 325 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 REXO1Q8N1G1 1221 aaKnown RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 GSDMAQ96QA5 445 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 PARP2Q9UGN5 583 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 ZBTB21Q9ULJ3 1066 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 CDC42BPGQ6DT37 1551 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 CARMIL3Q8ND23 1372 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 GOLGA6BA6NDN3 693 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 KCNQ3O43525 872 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 FMNL1O95466 1100 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 ARHGAP25P42331 645 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 PKP1Q13835 747 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 MORC3Q14149 939 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 FBF1Q8TES7 1133 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 IFT74Q96LB3 600 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 SAR1BQ9Y6B6 198 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 ADGRB3O60242 1522 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 M0QZ92 97 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 EEF2P13639 858 aaKnown RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 ARHGEF25Q86VW2 580 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 SPATS2Q86XZ4 545 aaKnown RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 SIRT2Q8IXJ6 389 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 UBLCP1Q8WVY7 318 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 AATFQ9NY61 560 aaKnown RBP eCLIP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 POLR1AO95602 1720 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 RASEFQ8IZ41 740 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 NSUN7Q8NE18 718 aaKnown RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 RNF26Q9BY78 433 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-205ENST00000367251 NKIRAS1Q9NYS0 192 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 QRICH2Q9H0J4 1663 aa9.99□□□□□ -0.81
SYNE1-205ENST00000367251 BAG6P46379 1132 aa9.98□□□□□ -0.81
SYNE1-205ENST00000367251 CUL4BQ13620 913 aa9.98□□□□□ -0.81
SYNE1-205ENST00000367251 SMCR8Q8TEV9 937 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-205ENST00000367251 CCDC114Q96M63 670 aa9.98□□□□□ -0.81
SYNE1-205ENST00000367251 TRIM6Q9C030 488 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-205ENST00000367251 CACYBPQ9HB71 228 aaKnown RBP9.98□□□□□ -0.81
SYNE1-205ENST00000367251 GPCPD1Q9NPB8 672 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms