RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 PORCNQ9H237 461 aa21.98■■□□□ 1.11
CLN3-202ENST00000355477 ARHGEF10LQ9HCE6 1279 aa21.98■■□□□ 1.11
CLN3-202ENST00000355477 FOXP2O15409 715 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 CCL5P13501 91 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 EEF2P13639 858 aaKnown RBP21.97■■□□□ 1.11
CLN3-202ENST00000355477 PLEKHM2Q8IWE5 1019 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 PXYLP1Q8TE99 480 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 GTF3C2Q8WUA4 911 aaPredicted RBP21.97■■□□□ 1.11
CLN3-202ENST00000355477 KANSL2Q9H9L4 492 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 MKNK2Q9HBH9 465 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 RABGAP1Q9Y3P9 1069 aa21.97■■□□□ 1.11
CLN3-202ENST00000355477 SPDYE16A6NNV3 312 aaPredicted RBP21.96■■□□□ 1.11
CLN3-202ENST00000355477 ATP2B2Q01814 1243 aa21.96■■□□□ 1.11
CLN3-202ENST00000355477 LBX2Q6XYB7 198 aa21.96■■□□□ 1.11
CLN3-202ENST00000355477 SPICE1Q8N0Z3 855 aa21.96■■□□□ 1.11
CLN3-202ENST00000355477 BTBD7Q9P203 1132 aa21.96■■□□□ 1.11
CLN3-202ENST00000355477 COL11A1P12107 1806 aaPredicted RBP21.95■■□□□ 1.1
CLN3-202ENST00000355477 UBXN2AP68543 259 aa21.95■■□□□ 1.1
CLN3-202ENST00000355477 NACAP1Q9BZK3 213 aa21.95■■□□□ 1.1
CLN3-202ENST00000355477 TANGO6Q9C0B7 1094 aa21.95■■□□□ 1.1
CLN3-202ENST00000355477 VCPKMTQ9H867 229 aa21.95■■□□□ 1.1
CLN3-202ENST00000355477 PRDM1O75626 825 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 INHAP05111 366 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 MAPK4P31152 587 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 COG2Q14746 738 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 VPS53Q5VIR6 699 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 LPAR1Q92633 364 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 FAM227BQ96M60 508 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 RNF208Q9H0X6 261 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 NAPBQ9H115 298 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 UNC93B1Q9H1C4 597 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 SH2D4AQ9H788 454 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 A0A0G2JMZ2 1700 aa21.94■■□□□ 1.1
CLN3-202ENST00000355477 TRIM6-TRIM34B2RNG4 842 aa21.93■■□□□ 1.1
CLN3-202ENST00000355477 GPR142Q7Z601 462 aa21.93■■□□□ 1.1
CLN3-202ENST00000355477 OSBPL3Q9H4L5 887 aa21.93■■□□□ 1.1
CLN3-202ENST00000355477 HELLSQ9NRZ9 838 aa21.93■■□□□ 1.1
CLN3-202ENST00000355477 HOXC10Q9NYD6 342 aa21.93■■□□□ 1.1
CLN3-202ENST00000355477 A0A0D9SFI3 127 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 GJB1P08034 283 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 PPARAQ07869 468 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 PLEKHH3Q7Z736 793 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 CCAR1Q8IX12 1150 aaKnown RBP21.92■■□□□ 1.1
CLN3-202ENST00000355477 ZNF444Q8N0Y2 327 aaPredicted RBP21.92■■□□□ 1.1
CLN3-202ENST00000355477 USP6NLQ92738 828 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 RILPL2Q969X0 211 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 SHISA4Q96DD7 197 aa21.92■■□□□ 1.1
CLN3-202ENST00000355477 ZNFX1Q9P2E3 1918 aaKnown RBP21.92■■□□□ 1.1
CLN3-202ENST00000355477 CEP290O15078 2479 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 IGKV6D-41A0A0C4DH26 115 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 CYP2B6P20813 491 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 DSG3P32926 999 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 TRIM32Q13049 653 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 MORN1Q5T089 497 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 NUDT12Q9BQG2 462 aa21.91■■□□□ 1.1
CLN3-202ENST00000355477 WDR46O15213 610 aaKnown RBP21.9■■□□□ 1.1
CLN3-202ENST00000355477 FLOT1O75955 427 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 GJA8P48165 433 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 CCNA1P78396 465 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 NMIQ13287 307 aaPredicted RBP21.9■■□□□ 1.1
CLN3-202ENST00000355477 MCMDC2Q4G0Z9 681 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 TICAM2Q86XR7 235 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 TRIB2Q92519 343 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 ZNF287Q9HBT7 754 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 INCENPQ9NQS7 918 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 NYAP2Q9P242 653 aa21.9■■□□□ 1.1
CLN3-202ENST00000355477 RAD21O60216 631 aa21.89■■□□□ 1.09
CLN3-202ENST00000355477 ZNF589Q86UQ0 364 aaPredicted RBP21.89■■□□□ 1.09
CLN3-202ENST00000355477 SOCS4Q8WXH5 440 aa21.89■■□□□ 1.09
CLN3-202ENST00000355477 ATG4CQ96DT6 458 aa21.89■■□□□ 1.09
CLN3-202ENST00000355477 GOPCQ9HD26 462 aa21.89■■□□□ 1.09
CLN3-202ENST00000355477 TACC3Q9Y6A5 838 aa21.89■■□□□ 1.09
CLN3-202ENST00000355477 HMGCRP04035 888 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 XRCC5P13010 732 aaKnown RBP21.88■■□□□ 1.09
CLN3-202ENST00000355477 SDSP20132 328 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 CTDSPL2Q05D32 466 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 PDE4BQ07343 736 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 FAM47AQ5JRC9 791 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 SAMD1Q6SPF0 538 aaPredicted RBP21.88■■□□□ 1.09
CLN3-202ENST00000355477 U2AF1L4Q8WU68 220 aaKnown RBP21.88■■□□□ 1.09
CLN3-202ENST00000355477 CEP95Q96GE4 821 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 MOV10L1Q9BXT6 1211 aaKnown RBP21.88■■□□□ 1.09
CLN3-202ENST00000355477 FBXO28Q9NVF7 368 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 CLIP2Q9UDT6 1046 aa21.88■■□□□ 1.09
CLN3-202ENST00000355477 SLC3A2P08195 630 aaKnown RBP21.87■■□□□ 1.09
CLN3-202ENST00000355477 PTPREP23469 700 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 PDE4AP27815 886 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 ALX1Q15699 326 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 CCL14Q16627 93 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 FAM83BQ5T0W9 1011 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 WDR78Q5VTH9 848 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 NKX2-3Q8TAU0 364 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 NUP88Q99567 741 aaPredicted RBP21.87■■□□□ 1.09
CLN3-202ENST00000355477 CWC22Q9HCG8 908 aaKnown RBP21.87■■□□□ 1.09
CLN3-202ENST00000355477 PAK6Q9NQU5 681 aaPredicted RBP21.87■■□□□ 1.09
CLN3-202ENST00000355477 MTMR4Q9NYA4 1195 aa21.87■■□□□ 1.09
CLN3-202ENST00000355477 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.87■■□□□ 1.09
CLN3-202ENST00000355477 F5H6K3 240 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 SGPL1O95470 568 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 FGAP02671 866 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms