RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 POLRMTO00411 1230 aaKnown RBP17.98■□□□□ 0.47
HMGA1-202ENST00000347617 FECHP22830 423 aa17.98■□□□□ 0.47
HMGA1-202ENST00000347617 MARCKSP29966 332 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-202ENST00000347617 TTC31Q49AM3 519 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-202ENST00000347617 ICE2Q659A1 982 aa17.98■□□□□ 0.47
HMGA1-202ENST00000347617 RASGRP2Q7LDG7 609 aa17.98■□□□□ 0.47
HMGA1-202ENST00000347617 TMC4Q7Z404 712 aa17.98■□□□□ 0.47
HMGA1-202ENST00000347617 PPFIBP1Q86W92 1011 aa17.98■□□□□ 0.47
HMGA1-202ENST00000347617 EPC1Q9H2F5 836 aa17.98■□□□□ 0.47
HMGA1-202ENST00000347617 FOXP2O15409 715 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 BBOX1O75936 387 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 GNAT2P19087 354 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 SARSP49591 514 aaKnown RBP17.97■□□□□ 0.47
HMGA1-202ENST00000347617 MORC3Q14149 939 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 KRT40Q6A162 431 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 ISM2Q6H9L7 571 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 ZNF579Q8NAF0 562 aaKnown RBP17.97■□□□□ 0.47
HMGA1-202ENST00000347617 RBM17Q96I25 401 aaKnown RBP17.97■□□□□ 0.47
HMGA1-202ENST00000347617 TFCP2L1Q9NZI6 479 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 MAN1B1Q9UKM7 699 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 NFE2L3Q9Y4A8 694 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 TAF1P21675 1872 aa17.97■□□□□ 0.47
HMGA1-202ENST00000347617 CTAGE15A4D2H0 777 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 FGAP02671 866 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CTAGE8P0CG41 777 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 PLCD1P51178 756 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 POSTNQ15063 836 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 WDR93Q6P2C0 686 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CTAGE6Q86UF2 777 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CNGA4Q8IV77 575 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CTAGE4Q8IX94 777 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 WASF1Q92558 559 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CRAMP1Q96RY5 1269 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 TNRC6CQ9HCJ0 1690 aaKnown RBP17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CPP00450 1065 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 TRDNQ13061 729 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 LONRF3Q496Y0 759 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 MAP9Q49MG5 647 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 CHST3Q7LGC8 479 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 RPGRQ92834 1020 aaKnown RBP17.96■□□□□ 0.47
HMGA1-202ENST00000347617 STRBPQ96SI9 672 aaKnown RBP17.96■□□□□ 0.47
HMGA1-202ENST00000347617 RGS17Q9UGC6 210 aaPredicted RBP17.96■□□□□ 0.47
HMGA1-202ENST00000347617 LCMT1Q9UIC8 334 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 WWC3Q9ULE0 1092 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 ITIH6Q6UXX5 1313 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 PNPLA7Q6ZV29 1317 aa17.96■□□□□ 0.47
HMGA1-202ENST00000347617 PATL2C9JE40 543 aaKnown RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 TRIM66O15016 1216 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 HIBADHP31937 336 aaKnown RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 AARSP49588 968 aaKnown RBP eCLIP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 ADKP55263 362 aaKnown RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 CORO7P57737 925 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 GOLGA8FQ08AF8 430 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 GOLGA8DPQ0D2H9 430 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 MCM6Q14566 821 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 KARSQ15046 597 aaKnown RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 KIF4BQ2VIQ3 1234 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 FILIP1LQ4L180 1135 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 NAPGQ99747 312 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 MRPL44Q9H9J2 332 aaKnown RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 ANGEL1Q9UNK9 670 aaKnown RBP17.95■□□□□ 0.46
HMGA1-202ENST00000347617 IRS2Q9Y4H2 1338 aa17.95■□□□□ 0.46
HMGA1-202ENST00000347617 XDHP47989 1333 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 GYG1P46976 350 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 METAP2P50579 478 aaKnown RBP eCLIP17.94■□□□□ 0.463e-15■■■□□ 14.6
HMGA1-202ENST00000347617 DDR1Q08345 913 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 CASP8Q14790 479 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 EFCAB13Q8IY85 973 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 AIDAQ96BJ3 306 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 ABCB6Q9NP58 842 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 GEMIN8Q9NWZ8 242 aaKnown RBP17.94■□□□□ 0.46
HMGA1-202ENST00000347617 LRP2BPQ9P2M1 347 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 ZNF213O14771 459 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 PPFIA4O75335 1185 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 GTF2A1P52655 376 aaPredicted RBP17.94■□□□□ 0.46
HMGA1-202ENST00000347617 ANTXR2P58335 489 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 PDE4BQ07343 736 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 SF3B2Q13435 895 aaKnown RBP17.94■□□□□ 0.46
HMGA1-202ENST00000347617 ZNF827Q17R98 1081 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 COL23A1Q86Y22 540 aaPredicted RBP17.94■□□□□ 0.46
HMGA1-202ENST00000347617 TMTC1Q8IUR5 882 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 CCDC24Q8N4L8 307 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 MAGEB6Q8N7X4 407 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 TMEM87BQ96K49 555 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.94■□□□□ 0.46
HMGA1-202ENST00000347617 BRIP1Q9BX63 1249 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 CEP131Q9UPN4 1083 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 IQSEC3Q9UPP2 1182 aaPredicted RBP17.94■□□□□ 0.46
HMGA1-202ENST00000347617 FAN1Q9Y2M0 1017 aa17.94■□□□□ 0.46
HMGA1-202ENST00000347617 TNS1Q9HBL0 1735 aaKnown RBP17.93■□□□□ 0.46
HMGA1-202ENST00000347617 NRXN2Q9P2S2 1712 aa17.93■□□□□ 0.46
HMGA1-202ENST00000347617 TRIM14Q14142 442 aa17.93■□□□□ 0.46
HMGA1-202ENST00000347617 SPATA1Q5VX52 437 aa17.93■□□□□ 0.46
HMGA1-202ENST00000347617 TTLL5Q6EMB2 1281 aa17.93■□□□□ 0.46
HMGA1-202ENST00000347617 FOXP4Q8IVH2 680 aaPredicted RBP17.93■□□□□ 0.46
HMGA1-202ENST00000347617 RPGRIP1Q96KN7 1286 aa17.93■□□□□ 0.46
HMGA1-202ENST00000347617 MYO5AQ9Y4I1 1855 aaKnown RBP17.93■□□□□ 0.46
HMGA1-202ENST00000347617 BMP6P22004 513 aa17.92■□□□□ 0.46
HMGA1-202ENST00000347617 PBX1P40424 430 aa17.92■□□□□ 0.46
HMGA1-202ENST00000347617 SAFBQ15424 915 aaKnown RBP eCLIP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms