RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MAGEA13PA6NCF6 341 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CHGBP05060 677 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PPP1R7Q15435 360 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 NAA35Q5VZE5 725 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ARHGEF25Q86VW2 580 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 KRI1Q8N9T8 703 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CGREF1Q99674 301 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 USH1CQ9Y6N9 552 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SHANK2Q9UPX8 1470 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 NSD2O96028 1365 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PALM3A6NDB9 673 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CETN3O15182 167 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CASP14P31944 242 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 USP11P51784 963 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 BLVRAP53004 296 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CSE1LP55060 971 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 LRIG3Q6UXM1 1119 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC197Q8NCU1 140 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SKA1Q96BD8 255 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 HIC2Q96JB3 615 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 STMN4Q9H169 189 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 AOX1Q06278 1338 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ATP5HO75947 161 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SERPINC1P01008 464 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MTMR3Q13615 1198 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PKP1Q13835 747 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 WASHC4Q2M389 1173 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PPFIBP1Q86W92 1011 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 WDR60Q8WVS4 1066 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 HVCN1Q96D96 273 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CTAGE1Q96RT6 745 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 TUBGCP4Q9UGJ1 667 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 EHBP1L1Q8N3D4 1523 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MBD4O95243 580 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 IBSPP21815 317 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CA8P35219 290 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 POU5F1Q01860 360 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PKN1Q16512 942 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ANKRD20A8PQ5CZ79 823 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 AKNAD1Q5T1N1 836 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MYO1HQ8N1T3 1032 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MIGA1Q8NAN2 632 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MTRQ99707 1265 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 KIF14Q15058 1648 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 GOLGA8TH3BQL2 631 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MATN2O00339 956 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 BIN1O00499 593 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 IDH3BO43837 385 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PFKFB2O60825 505 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CBFA2T3O75081 653 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 GOLGA8HP0CJ92 632 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MTTPP55157 894 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 FAM160A1Q05DH4 1040 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ITGA9Q13797 1035 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ADALQ6DHV7 355 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 HIBCHQ6NVY1 386 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SH3TC2Q8TF17 1288 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ERBINQ96RT1 1412 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SLC39A3Q9BRY0 314 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 YIPF2Q9BWQ6 316 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MRPL46Q9H2W6 279 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SAP30BPQ9UHR5 308 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 R3HDM2Q9Y2K5 976 aaKnown RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ABCA10Q8WWZ4 1543 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 TESPA1A2RU30 521 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SMARCA5O60264 1052 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ZKSCAN1P17029 563 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ELF3P78545 371 aaPredicted RBP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 ITIH4Q14624 930 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 SAFBQ15424 915 aaKnown RBP eCLIP4.6□□□□□ -1.67
NEDD4-201ENST00000338963 CROCCP3Q8IVE0 287 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 MTMR7Q9Y216 660 aa4.6□□□□□ -1.67
NEDD4-201ENST00000338963 PABPN1LA6NDY0 278 aaKnown RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 AP5Z1O43299 807 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 HNRNPCP07910 306 aaKnown RBP eCLIP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 CD97P48960 835 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 GNAQP50148 359 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 GSTA3Q16772 222 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 PDCD4Q53EL6 469 aaKnown RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 BOLA3Q53S33 107 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ZMYM1Q5SVZ6 1142 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 PNMA8AQ86V59 439 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 CKAP2LQ8IYA6 745 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 KIFAP3Q92845 792 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ANKZF1Q9H8Y5 726 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 FBXO9Q9UK97 447 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ANO9A1A5B4 782 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 M0R2C6 588 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 RGL2O15211 777 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ATP2A2P16615 1042 aaKnown RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 MATR3P43243 847 aaKnown RBP eCLIP4.59□□□□□ -1.678e-6■■■□□ 17.4
NEDD4-201ENST00000338963 USP4Q13107 963 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 TRIM14Q14142 442 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 COL19A1Q14993 1142 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 RASIP1Q5U651 963 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 RTFDC1Q9BY42 306 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 CARD9Q9H257 536 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ANO2Q9NQ90 1003 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms