RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 CERS5Q8N5B7 392 aa12.41□□□□□ -0.42
RTN3-201ENST00000338850 LPIN2Q92539 896 aa12.41□□□□□ -0.42
RTN3-201ENST00000338850 ZBED3Q96IU2 234 aaPredicted RBP12.41□□□□□ -0.42
RTN3-201ENST00000338850 FEZ1Q99689 392 aa12.41□□□□□ -0.42
RTN3-201ENST00000338850 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
RTN3-201ENST00000338850 IGSF3O75054 1194 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 IL1R1P14778 569 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 NT5C2P49902 561 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 SF3A1Q15459 793 aaKnown RBP12.4□□□□□ -0.42
RTN3-201ENST00000338850 CCDC144BQ3MJ40 725 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 SLFNL1Q499Z3 407 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 CT47A1Q5JQC4 288 aaPredicted RBP12.4□□□□□ -0.42
RTN3-201ENST00000338850 APOA5Q6Q788 366 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 LDHAL6AQ6ZMR3 332 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 ZNF804AQ7Z570 1209 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 CCDC144CPQ8IYA2 1237 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 NBPF3Q9H094 633 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 SAGE1Q9NXZ1 904 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 HDAC9Q9UKV0 1011 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 MYH2Q9UKX2 1941 aa12.4□□□□□ -0.42
RTN3-201ENST00000338850 UBE2Q2LH0YL09 131 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 CUTAO60888 179 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 SLC3A2P08195 630 aaKnown RBP12.39□□□□□ -0.43
RTN3-201ENST00000338850 TNNT1P13805 278 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 PDE6AP16499 860 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 METAP2P50579 478 aaKnown RBP eCLIP12.39□□□□□ -0.43
RTN3-201ENST00000338850 NDUFA8P51970 172 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 RBM10P98175 930 aaKnown RBP12.39□□□□□ -0.43
RTN3-201ENST00000338850 PTPAQ15257 358 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 ZRSR1Q15695 479 aaKnown RBP12.39□□□□□ -0.43
RTN3-201ENST00000338850 NTRK3Q16288 839 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 FCHSD1Q86WN1 690 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 C17orf53Q8N3J3 647 aaPredicted RBP12.39□□□□□ -0.43
RTN3-201ENST00000338850 CCDC112Q8NEF3 446 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 CSRNP1Q96S65 589 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 SDF4Q9BRK5 362 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 KRT23Q9C075 422 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 CNNM1Q9NRU3 951 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 RNF186Q9NXI6 227 aa12.39□□□□□ -0.43
RTN3-201ENST00000338850 CCDC69A6NI79 296 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 CBFA2T2O43439 604 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 ZNF202O95125 648 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 PCP11498 1178 aaKnown RBP12.38□□□□□ -0.43
RTN3-201ENST00000338850 IFNAR1P17181 557 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 FKBP1AP62942 108 aaKnown RBP12.38□□□□□ -0.43
RTN3-201ENST00000338850 LRMPQ12912 555 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 UTP14CQ5TAP6 766 aaKnown RBP12.38□□□□□ -0.43
RTN3-201ENST00000338850 RESP18Q5W5W9 173 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 APOBEC3FQ8IUX4 373 aaKnown RBP12.38□□□□□ -0.43
RTN3-201ENST00000338850 TBC1D10CQ8IV04 446 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 TMTC2Q8N394 836 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 AOPEPQ8N6M6 819 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 MTMR14Q8NCE2 650 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 STAG1Q8WVM7 1258 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 STRBPQ96SI9 672 aaKnown RBP12.38□□□□□ -0.43
RTN3-201ENST00000338850 FTOQ9C0B1 505 aaKnown RBP eCLIP12.38□□□□□ -0.43
RTN3-201ENST00000338850 MCOLN1Q9GZU1 580 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 CGNQ9P2M7 1197 aaKnown RBP12.38□□□□□ -0.43
RTN3-201ENST00000338850 CLIC4Q9Y696 253 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 MYH13Q9UKX3 1938 aa12.38□□□□□ -0.43
RTN3-201ENST00000338850 PATL2C9JE40 543 aaKnown RBP12.37□□□□□ -0.43
RTN3-201ENST00000338850 ZBTB43O43298 467 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 TRPA1O75762 1119 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 FMNL1O95466 1100 aaPredicted RBP12.37□□□□□ -0.43
RTN3-201ENST00000338850 SLC5A1P13866 664 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 PFKFB1P16118 471 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 NF2P35240 595 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 MAP3K12Q12852 859 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 NCAPHQ15003 741 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 DLGAP5Q15398 846 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 SLC9C2Q5TAH2 1124 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 CCDC102BQ68D86 513 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 KRT40Q6A162 431 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 NBPF11Q86T75 865 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 VPS37DQ86XT2 251 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
RTN3-201ENST00000338850 CCAR2Q8N163 923 aaKnown RBP12.37□□□□□ -0.43
RTN3-201ENST00000338850 TRIML1Q8N9V2 468 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 ZNF579Q8NAF0 562 aaKnown RBP12.37□□□□□ -0.43
RTN3-201ENST00000338850 IGDCC4Q8TDY8 1250 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 MAP3K14Q99558 947 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 ALG1Q9BT22 464 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 LY9Q9HBG7 655 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 NRBP1Q9UHY1 535 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 HOOK1Q9UJC3 728 aaKnown RBP12.37□□□□□ -0.43
RTN3-201ENST00000338850 PCDHAC2Q9Y5I4 1007 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 CASP8AP2Q9UKL3 1982 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 FAM205AQ6ZU69 1335 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 ZNF532Q9HCE3 1301 aa12.37□□□□□ -0.43
RTN3-201ENST00000338850 COL1A1P02452 1464 aaPredicted RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 CCDC196A0A1B0GTZ2 297 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 KIF28PB7ZC32 967 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 F8W031 263 aaPredicted RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 DTNBO60941 627 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 SKILP12757 684 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 SYKP43405 635 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 CEBPZQ03701 1054 aaKnown RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 DGKZQ13574 1117 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 UBE4AQ14139 1066 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 TTLL12Q14166 644 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms