RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 KCNJ12Q14500 433 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 DZIP3Q86Y13 1208 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 CDAN1Q8IWY9 1227 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 ZKSCAN3Q9BRR0 538 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 NEURL1BA8MQ27 555 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 FBXO18Q8NFZ0 1043 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 TRPC3Q13507 836 aa11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 LSG1Q9H089 658 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-202ENST00000336838 I3L4J1 428 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 CCNT1O60563 726 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 SLMAPQ14BN4 828 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 CABS1Q96KC9 395 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 PANX2Q96RD6 677 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 ANKRD26Q9UPS8 1709 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 C6orf229H3BNL8 230 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 MAP7Q14244 749 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 CALCRLQ16602 461 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 AKNAD1Q5T1N1 836 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 USP44Q9H0E7 712 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 LMTK2Q8IWU2 1503 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 PFKFB1P16118 471 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 CCDC170Q8IYT3 715 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 MAK16Q9BXY0 300 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 KCNJ6P48051 423 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 NONOQ15233 471 aaKnown RBP eCLIP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 LRRC7Q96NW7 1537 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 RNF216Q9NWF9 866 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 SSX2IPQ9Y2D8 614 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 RNASELQ05823 741 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 SEPT2Q15019 361 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 MAP7D1Q3KQU3 841 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 OTUD7AQ8TE49 926 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 TMOD4Q9NZQ9 345 aa11.4□□□□□ -0.58
CCDC88A-202ENST00000336838 YWHAEP62258 255 aaKnown RBP11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 SLFN12Q8IYM2 578 aa11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 METTL14Q9HCE5 456 aaKnown RBP11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 CCDC169A6NNP5 214 aa11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 PDE6BP35913 854 aa11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 ATP6V1AP38606 617 aa11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 PEX26Q7Z412 305 aa11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 SEC62Q99442 399 aaKnown RBP11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 ARHGEF40Q8TER5 1519 aa11.4□□□□□ -0.59
CCDC88A-202ENST00000336838 ALS2CLQ60I27 953 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 RGS22Q8NE09 1264 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 CDC23Q9UJX2 597 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 MTX1Q13505 466 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 FAM227BQ96M60 508 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 ADCY7P51828 1080 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 CFAP157Q5JU67 520 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 DHTKD1Q96HY7 919 aaPredicted RBP11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 SPZ1Q9BXG8 430 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 SLC39A14Q15043 492 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 OGFOD1Q8N543 542 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 ATP2A3Q93084 1043 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 HOOK2Q96ED9 719 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 PAIP2Q9BPZ3 127 aaKnown RBP11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 MIS12Q9H081 205 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 SPOPO43791 374 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 PHBP35232 272 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 MAP2K2P36507 400 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 MORC3Q14149 939 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 SRGAP1Q7Z6B7 1085 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 TRERF1Q96PN7 1200 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 RNF40O75150 1001 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 TNNI2P48788 182 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 STX17P56962 302 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 EIF4A1P60842 406 aaKnown RBP11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 NIP7Q9Y221 180 aaKnown RBP eCLIP11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 THAP12O43422 761 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 HSPA6P17066 643 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 ITGA6P23229 1130 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 SPATA5Q8NB90 893 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 MYCBPQ99417 103 aaPredicted RBP11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 CAPS2Q9BXY5 557 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 TNNQ9UQP3 1299 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 USP6P35125 1406 aa11.39□□□□□ -0.59
CCDC88A-202ENST00000336838 EEF2P13639 858 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF365Q70YC5 407 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 TSC1Q92574 1164 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 VAT1LQ9HCJ6 419 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 UBE3CQ15386 1083 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 XRCC5P13010 732 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 PPP1R13BQ96KQ4 1090 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 RNF26Q9BY78 433 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 ALDH8A1Q9H2A2 487 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF853P0CG23 659 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 TEKT1Q969V4 418 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 MTA3Q9BTC8 594 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 EPHB4P54760 987 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 LMNB2Q03252 620 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 NEDD9Q14511 834 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 HSP90AA4PQ58FG1 418 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 AMFRQ9UKV5 643 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 NAA25Q14CX7 972 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 SPTLC3Q9NUV7 552 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 DDX41Q9UJV9 622 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF215Q9UL58 517 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms