RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 EIF4A2Q14240 407 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 DMRTA1Q5VZB9 504 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 KRT26Q7Z3Y9 468 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 TRPM4Q8TD43 1214 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 GATA6Q92908 595 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 KCNN1Q92952 543 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 CLP1Q92989 425 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 MRPL38Q96DV4 380 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 EHMT1Q9H9B1 1298 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 RYDENQ9NUL5 291 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 TYW1Q9NV66 732 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 POLKQ9UBT6 870 aa2.14□□□□□ -2.07
LINC00643-201ENST00000334389 DDX20Q9UHI6 824 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 TPX2Q9ULW0 747 aaKnown RBP2.14□□□□□ -2.07
LINC00643-201ENST00000334389 MMP1P03956 469 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 USP17L8P0C7I0 530 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 HOXB8P17481 243 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 GGCXP38435 758 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 NOVP48745 357 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 CABP4P57796 275 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 FPGSQ05932 587 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 SRSF1Q07955 248 aaKnown RBP eCLIP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 PTPROQ16827 1216 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 LAIR1Q6GTX8 287 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 MICALL2Q8IY33 904 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 SYNPOQ8N3V7 929 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ZBTB44Q8NCP5 570 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 CAGE1Q8TC20 777 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 UBE2OQ9C0C9 1292 aaKnown RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 TRPV6Q9H1D0 765 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 HMX1Q9NP08 348 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 EPS15L1Q9UBC2 864 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 NFE2L3Q9Y4A8 694 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 TACC3Q9Y6A5 838 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 A0A087WV48 116 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 CDK2AP1O14519 115 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 PPP1R12BO60237 982 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 EFEMP2O95967 443 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 EPS15P42566 896 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 EFHBQ8N7U6 833 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ZNF526Q8TF50 670 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 FAM151AQ8WW52 585 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 TIFAQ96CG3 184 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ZNF594Q96JF6 807 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ZC3H10Q96K80 434 aaKnown RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 PTPN18Q99952 460 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 MROH8Q9H579 483 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 NLRP2Q9NX02 1062 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 SLC5A4Q9NY91 659 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 MAP3K20Q9NYL2 800 aaKnown RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 MSRAQ9UJ68 235 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ASAP1Q9ULH1 1129 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 NR2E1Q9Y466 385 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 DDTLA6NHG4 134 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 PHF20L1A8MW92 1017 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 SLC25A27O95847 323 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 TCF3P15923 654 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 THBS2P35442 1172 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 RABEPKQ7Z6M1 372 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 FBXO33Q7Z6M2 555 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 HPS6Q86YV9 775 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ANKK1Q8NFD2 765 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 TBC1D16Q8TBP0 767 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 HLA-CQ95604 372 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 EPAS1Q99814 870 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 HAUS7Q99871 368 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 R3HDMLQ9H3Y0 253 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 HERC5Q9UII4 1024 aaKnown RBP2.13□□□□□ -2.07
LINC00643-201ENST00000334389 ZMYM5Q9UJ78 669 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 TUBD1Q9UJT1 453 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 RABGAP1Q9Y3P9 1069 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 FRMPD4Q14CM0 1322 aa2.13□□□□□ -2.07
LINC00643-201ENST00000334389 DENND4CQ5VZ89 1909 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 ABHD14A-ACY1A0A1B0GW23 586 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TMEM221A6NGB7 291 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 M0R296 226 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 ECE2O60344 883 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 EPN2O95208 641 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 GDF11O95390 407 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CLTBP09497 229 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PRKCSHP14314 528 aaPredicted RBP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PRKCQQ04759 706 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 SCARF1Q14162 830 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CCDC27Q2M243 656 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PADI6Q6TGC4 694 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 BICDL1Q6ZP65 573 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CCDC191Q8NCU4 936 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 KRTAP4-11Q9BYQ6 195 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TMX4Q9H1E5 349 aaPredicted RBP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PCDHGA4Q9Y5G9 962 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 A0A0U1RQG5 324 aaPredicted RBP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TRIM66O15016 1216 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TLR3O15455 904 aaKnown RBP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 LPXNO60711 386 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CHRNA5P30532 468 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 STARD6P59095 220 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 UBE4AQ14139 1066 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TMEM240Q5SV17 173 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TMEM132EQ6IEE7 984 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 NFRKBQ6P4R8 1299 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms