RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RPS8P62241 208 aaKnown RBP11.88□□□□□ -0.51
COL3A1-202ENST00000317840 SLC35F6Q8N357 371 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 BMP15O95972 392 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 CAPN2P17655 700 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 STAT6P42226 847 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 CNBD1Q8NA66 436 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 PAGE5Q96GU1 130 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 MKNK2Q9HBH9 465 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 ZNHIT6Q9NWK9 470 aaKnown RBP11.88□□□□□ -0.51
COL3A1-202ENST00000317840 RTL9Q8NET4 1388 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 SPATA31A1Q5TZJ5 1347 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 STK36Q9NRP7 1315 aa11.88□□□□□ -0.51
COL3A1-202ENST00000317840 ST5P78524 1137 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 STIM1Q13586 685 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 NKX1-1Q15270 411 aaPredicted RBP11.87□□□□□ -0.51
COL3A1-202ENST00000317840 SRGAP1Q7Z6B7 1085 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 BBXQ8WY36 941 aaPredicted RBP11.87□□□□□ -0.51
COL3A1-202ENST00000317840 CAPZA3Q96KX2 299 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 PLA2G12BQ9BX93 195 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 PDE11AQ9HCR9 933 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 CDC23Q9UJX2 597 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 PLEKHA8P1O95397 391 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 WWC2Q6AWC2 1192 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 SEPT12Q8IYM1 358 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 CCDC148Q8NFR7 591 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 TRIM47Q96LD4 638 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 NAPGQ99747 312 aaPredicted RBP11.87□□□□□ -0.51
COL3A1-202ENST00000317840 ADGRG1Q9Y653 693 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 ABCC12Q96J65 1359 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 UBA7P41226 1012 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 SPAG1Q07617 926 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 FAM47AQ5JRC9 791 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 RAD9BQ6WBX8 426 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 FERMT2Q96AC1 680 aa11.87□□□□□ -0.51
COL3A1-202ENST00000317840 RNF26Q9BY78 433 aaPredicted RBP11.87□□□□□ -0.51
COL3A1-202ENST00000317840 AATFQ9NY61 560 aaKnown RBP eCLIP11.87□□□□□ -0.51
COL3A1-202ENST00000317840 COL5A2P05997 1499 aaPredicted RBP11.87□□□□□ -0.51
COL3A1-202ENST00000317840 CCDC194A0A1B0GVG4 234 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 POTEB2H3BUK9 544 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 PAK1Q13153 545 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 HDXQ7Z353 690 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ZSCAN29Q8IWY8 852 aaPredicted RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 CCDC47Q96A33 483 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 GDAP1L1Q96MZ0 367 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ZSCAN10Q96SZ4 725 aaPredicted RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 GBP3Q9H0R5 595 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 TTF2Q9UNY4 1162 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 USP17L12C9JPN9 530 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 USP17L21D6R901 530 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 TRIM21P19474 475 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ARID4AP29374 1257 aaPredicted RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 CYP2C19P33261 490 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 NR1I3Q14994 352 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ALX1Q15699 326 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ZSCAN26Q16670 478 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 TBC1D9BQ66K14 1250 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 TMTC1Q8IUR5 882 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 GSDMAQ96QA5 445 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 NAA15Q9BXJ9 866 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 CCDC151A5D8V7 595 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ACTN4O43707 911 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 TBC1D8O95759 1140 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 STAG1Q8WVM7 1258 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 NELFBQ8WX92 580 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 PANX2Q96RD6 677 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 MFAP3LO75121 409 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ZNF18P17022 549 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 NAP1L1P55209 391 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 DYNLL1P63167 89 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 ZNF579Q8NAF0 562 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 VAT1LQ9HCJ6 419 aa11.86□□□□□ -0.51
COL3A1-202ENST00000317840 LUC7L2Q9Y383 392 aaKnown RBP11.86□□□□□ -0.51
COL3A1-202ENST00000317840 DCCP43146 1447 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 AFDNP55196 1824 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 A0A0U1RQJ8 604 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 A0A1B0GTH6 734 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 ENC1O14682 589 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 MARCH6O60337 910 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 SASH3O75995 380 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 TFRCP02786 760 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 HIBADHP31937 336 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 BRD3Q15059 726 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 CCDC70Q6NSX1 233 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 CYP26C1Q6V0L0 522 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 ATRIPQ8WXE1 791 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 CELF1Q92879 486 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 TRIM34Q9BYJ4 488 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 NYXQ9GZU5 481 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 STX8Q9UNK0 236 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 SLIT3O75094 1523 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 CDHR2Q9BYE9 1310 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 SMIM22K7EJ46 135 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 FXR1P51114 621 aaKnown RBP eCLIP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 CCDC122Q5T0U0 273 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 GPIHBP1Q8IV16 184 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 JADE2Q9NQC1 790 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 FANCGO15287 622 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 ATP8B1O43520 1251 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 ZRANB2O95218 330 aaKnown RBP eCLIP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms