RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CNPY4Q8N129 248 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 RABEP2Q9H5N1 569 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 SAP30BPQ9UHR5 308 aaKnown RBP12.35□□□□□ -0.43
LSM3-201ENST00000306024 HSP90AA4PQ58FG1 418 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 ZNF444Q8N0Y2 327 aaPredicted RBP12.35□□□□□ -0.43
LSM3-201ENST00000306024 TGFBRAP1Q8WUH2 860 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 L2HGDHQ9H9P8 463 aa12.35□□□□□ -0.43
LSM3-201ENST00000306024 KIF5CO60282 957 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 WDHD1O75717 1129 aaPredicted RBP12.34□□□□□ -0.43
LSM3-201ENST00000306024 CYP21A2P08686 494 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 CHMP4BP1P59074 171 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 PDE4BQ07343 736 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 PACS2Q86VP3 889 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 IQCA1Q86XH1 822 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 RAB11FIP4Q86YS3 637 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 MAPKAPK5Q8IW41 473 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 EFCAB13Q8IY85 973 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 TADA3O75528 432 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 CDR1P51861 262 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 CTDSPL2Q05D32 466 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 ADCK5Q3MIX3 580 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 Q6ZUG5 572 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 PODNQ7Z5L7 613 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 CNNM3Q8NE01 707 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 TEKT1Q969V4 418 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 RUFY1Q96T51 708 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 TAOK3Q9H2K8 898 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 ZNF287Q9HBT7 754 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 PHLPP2Q6ZVD8 1323 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 TSPY2A6NKD2 308 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 B4E1Z4 1266 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 USP17L12C9JPN9 530 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 USP17L21D6R901 530 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 PRC1O43663 620 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 ECE2O60344 883 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 PRDM1O75626 825 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 BTDP43251 543 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 TMEM67Q5HYA8 995 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 DHX32Q7L7V1 743 aaKnown RBP12.34□□□□□ -0.43
LSM3-201ENST00000306024 SLC51AQ86UW1 340 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 STRBPQ96SI9 672 aaKnown RBP12.34□□□□□ -0.43
LSM3-201ENST00000306024 ZSCAN16Q9H4T2 348 aaPredicted RBP12.34□□□□□ -0.43
LSM3-201ENST00000306024 RFX7Q2KHR2 1363 aa12.34□□□□□ -0.43
LSM3-201ENST00000306024 TBC1D8O95759 1140 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 CCT2P78371 535 aaKnown RBP12.33□□□□□ -0.44
LSM3-201ENST00000306024 BRD3Q15059 726 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 NF2P35240 595 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 TICAM2Q86XR7 235 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 NOC3LQ8WTT2 800 aaKnown RBP12.33□□□□□ -0.44
LSM3-201ENST00000306024 RABGGTAQ92696 567 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 FAM212AQ96EL1 285 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 KRT23Q9C075 422 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 VEZTQ9HBM0 779 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 E7EWF7 191 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 NECTIN1Q15223 517 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 RPAINQ86UA6 219 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 AFAP1L1Q8TED9 768 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 ESR2Q92731 530 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 CNNM2Q9H8M5 875 aa12.33□□□□□ -0.44
LSM3-201ENST00000306024 USP17L3A6NCW0 530 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 USP17L4A6NCW7 530 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 EIF6P56537 245 aaKnown RBP12.32□□□□□ -0.44
LSM3-201ENST00000306024 PPP2R5AQ15172 486 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 USP17L1Q7RTZ2 530 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 TADA2BQ86TJ2 420 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 TPCN1Q9ULQ1 816 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 A0A087WUV0 522 aaPredicted RBP12.32□□□□□ -0.44
LSM3-201ENST00000306024 MPHOSPH10O00566 681 aaKnown RBP12.32□□□□□ -0.44
LSM3-201ENST00000306024 MYO1BO43795 1136 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 HLA-DOAP06340 250 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 RPS6KB1P23443 525 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 APOBRQ0VD83 1088 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 LZTFL1Q9NQ48 299 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 USP40Q9NVE5 1235 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 CCDC151A5D8V7 595 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 GOLGA8BA8MQT2 603 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 PRR29P0C7W0 189 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 FANCCQ00597 558 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 FAM160A1Q05DH4 1040 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 MRPS27Q92552 414 aaKnown RBP12.32□□□□□ -0.44
LSM3-201ENST00000306024 TTC14Q96N46 770 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 SUFUQ9UMX1 484 aa12.32□□□□□ -0.44
LSM3-201ENST00000306024 A0A1B0GVL5 298 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 ZRANB2O95218 330 aaKnown RBP eCLIP12.31□□□□□ -0.44
LSM3-201ENST00000306024 TXLNAP40222 546 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 IQCB1Q15051 598 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 LRCH2Q5VUJ6 765 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 CCDC70Q6NSX1 233 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 NSUN4Q96CB9 384 aaKnown RBP12.31□□□□□ -0.44
LSM3-201ENST00000306024 NUP188Q5SRE5 1749 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 KLF18A0A0U1RQI7 1052 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 DCAF8L1A6NGE4 600 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 JAK2O60674 1132 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 INPP5BP32019 993 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 TGFB2P61812 414 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 TCP10Q12799 353 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 MICU3Q86XE3 530 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 PGBD1Q96JS3 809 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 ZKSCAN3Q9BRR0 538 aa12.31□□□□□ -0.44
LSM3-201ENST00000306024 TM6SF1Q9BZW5 370 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms