RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 MS4A4AQ96JQ5 239 aa11.14□□□□□ -0.63
RFX3-201ENST00000302303 MYL10Q9BUA6 226 aa11.14□□□□□ -0.63
RFX3-201ENST00000302303 KIAA1683Q9H0B3 1180 aa11.14□□□□□ -0.63
RFX3-201ENST00000302303 KCNH4Q9UQ05 1017 aa11.14□□□□□ -0.63
RFX3-201ENST00000302303 CSADQ9Y600 493 aa11.14□□□□□ -0.63
RFX3-201ENST00000302303 F5H6K3 240 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 BACE1P56817 501 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 KLRC3Q07444 240 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 CCDC178Q5BJE1 867 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 SH3D19Q5HYK7 790 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 ZNF654Q8IZM8 581 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 TMTC2Q8N394 836 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 PNMA1Q8ND90 353 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 SNX21Q969T3 373 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 SLC10A4Q96EP9 437 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 ZNF274Q96GC6 653 aaPredicted RBP11.13□□□□□ -0.63
RFX3-201ENST00000302303 WNK4Q96J92 1243 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 PICK1Q9NRD5 415 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 SYNPO2Q9UMS6 1093 aa11.13□□□□□ -0.63
RFX3-201ENST00000302303 RBM19Q9Y4C8 960 aaKnown RBP11.13□□□□□ -0.63
RFX3-201ENST00000302303 KLF18A0A0U1RQI7 1052 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 USP17L10C9JJH3 530 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 NDUFB10O96000 172 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 PDHBP11177 359 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 RXRAP19793 462 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 CDC27P30260 824 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 APLP1P51693 650 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 PPIL2Q13356 520 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 MTMR2Q13614 643 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 SART3Q15020 963 aaKnown RBP11.12□□□□□ -0.63
RFX3-201ENST00000302303 SPRYD7Q5W111 196 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 RAB11FIP4Q86YS3 637 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 RASAL3Q86YV0 1011 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 STAG2Q8N3U4 1231 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 GMCL1P1Q8NEA9 526 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 IL27Q8NEV9 243 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 OTUD5Q96G74 571 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 HHIPL1Q96JK4 782 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 C12orf42Q96LP6 360 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 VCPKMTQ9H867 229 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 NID2Q14112 1375 aa11.12□□□□□ -0.63
RFX3-201ENST00000302303 MYH4Q9Y623 1939 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 A0A0G2JLL6 359 aaPredicted RBP11.11□□□□□ -0.63
RFX3-201ENST00000302303 ERICH2A1L162 156 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 PALM3A6NDB9 673 aaPredicted RBP11.11□□□□□ -0.63
RFX3-201ENST00000302303 TRIM75PA6NK02 468 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 CXCL11O14625 94 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 DTNBO60941 627 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 ATP2B2Q01814 1243 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 FUT2Q10981 343 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 RGMBQ6NW40 437 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 USP17L2Q6R6M4 530 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 POTEEQ6S8J3 1075 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 PRRT2Q7Z6L0 340 aaPredicted RBP11.11□□□□□ -0.63
RFX3-201ENST00000302303 NBPF11Q86T75 865 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 NUP88Q99567 741 aaPredicted RBP11.11□□□□□ -0.63
RFX3-201ENST00000302303 TBC1D2Q9BYX2 928 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 MAD2L2Q9UI95 211 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 LIMCH1Q9UPQ0 1083 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 PTPRFP10586 1907 aa11.11□□□□□ -0.63
RFX3-201ENST00000302303 RASSF10A6NK89 507 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 PFKFB2O60825 505 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 CTDNEP1O95476 244 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 SLC10A3P09131 477 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 ADD1P35611 737 aaKnown RBP11.1□□□□□ -0.63
RFX3-201ENST00000302303 HTRA3P83110 453 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 SCRN1Q12765 414 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 GRM4Q14833 912 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 ANKRD1Q15327 319 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 ZYXQ15942 572 aaKnown RBP11.1□□□□□ -0.63
RFX3-201ENST00000302303 NTRK3Q16288 839 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 GPAT2Q6NUI2 795 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 NOL8Q76FK4 1167 aaKnown RBP11.1□□□□□ -0.63
RFX3-201ENST00000302303 SPICE1Q8N0Z3 855 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 NECAB1Q8N987 351 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 FANCBQ8NB91 859 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 GMCL1Q96IK5 515 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 TMX3Q96JJ7 454 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 ZIC5Q96T25 663 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 MAP3K14Q99558 947 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 KAT14Q9H8E8 782 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 AS3MTQ9HBK9 375 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 NCOA5Q9HCD5 579 aaKnown RBP11.1□□□□□ -0.63
RFX3-201ENST00000302303 ARHGEF10LQ9HCE6 1279 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 CREBZFQ9NS37 354 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.1□□□□□ -0.63
RFX3-201ENST00000302303 SLC12A7Q9Y666 1083 aa11.1□□□□□ -0.63
RFX3-201ENST00000302303 TESPA1A2RU30 521 aaPredicted RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 CCDC69A6NI79 296 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 C19orf81C9J6K1 198 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CYTH3O43739 400 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 ST18O60284 1047 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 DDAH1O94760 285 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 GOLGA8HP0CJ92 632 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 ZNF157P51786 506 aaPredicted RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 RCAN1P53805 252 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 HMGCS2P54868 508 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 ZNF543Q08ER8 600 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 PPP4R3BQ5MIZ7 849 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms