RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TANGO6Q9C0B7 1094 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 SH2D4AQ9H788 454 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 MCM9Q9NXL9 1143 aa17.9■□□□□ 0.46
CCDC88B-201ENST00000301897 MPHOSPH10O00566 681 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 PDE6AP16499 860 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 ADORA2AP29274 412 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 GUCY1A2P33402 732 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 SLC9C2Q5TAH2 1124 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 TMEM179Q6ZVK1 233 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 ABRAQ8N0Z2 381 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 MOV10L1Q9BXT6 1211 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 SPATC1LQ9H0A9 340 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 MROH8Q9H579 483 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 SWAP70Q9UH65 585 aa17.89■□□□□ 0.45
CCDC88B-201ENST00000301897 POTEB2H3BUK9 544 aa17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 SEPT4O43236 478 aa17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 ATN1P54259 1190 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 RTP1P59025 263 aa17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 ARHGEF10LQ9HCE6 1279 aa17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 EXOC6BQ9Y2D4 811 aa17.88■□□□□ 0.45
CCDC88B-201ENST00000301897 RLBP1P12271 317 aa17.87■□□□□ 0.45
CCDC88B-201ENST00000301897 ERCC3P19447 782 aa17.87■□□□□ 0.45
CCDC88B-201ENST00000301897 CLASRPQ8N2M8 674 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-201ENST00000301897 TRPV1Q8NER1 839 aa17.87■□□□□ 0.45
CCDC88B-201ENST00000301897 MYH8P13535 1937 aa17.87■□□□□ 0.45
CCDC88B-201ENST00000301897 RLFQ13129 1914 aa17.87■□□□□ 0.45
CCDC88B-201ENST00000301897 A0A0G2JMZ2 1700 aa17.86■□□□□ 0.45
CCDC88B-201ENST00000301897 A0A1W2PRG0 241 aa17.86■□□□□ 0.45
CCDC88B-201ENST00000301897 RHPN1Q8TCX5 695 aa17.86■□□□□ 0.45
CCDC88B-201ENST00000301897 DCP1AQ9NPI6 582 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-201ENST00000301897 ATP11BQ9Y2G3 1177 aa17.86■□□□□ 0.45
CCDC88B-201ENST00000301897 FLOT1O75955 427 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 SLC25A27O95847 323 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 DSG3P32926 999 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 GJC2Q5T442 439 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 ZNF697Q5TEC3 545 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 SLC39A5Q6ZMH5 540 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 AMOTL1Q8IY63 956 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 CCDC17Q96LX7 622 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 ZNF532Q9HCE3 1301 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 ATP8A2Q9NTI2 1148 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 NRBP1Q9UHY1 535 aa17.85■□□□□ 0.45
CCDC88B-201ENST00000301897 LTBP2Q14767 1821 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 IFIT2P09913 472 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 MS4A1P11836 297 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 FCER1AP12319 257 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 ICA1Q05084 483 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 PLS1Q14651 629 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 SNX17Q15036 470 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 C1orf53Q5VUE5 145 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 NCAPG2Q86XI2 1143 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 KIF1BPQ96EK5 621 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 TMX2Q9Y320 296 aa17.84■□□□□ 0.45
CCDC88B-201ENST00000301897 ZNFX1Q9P2E3 1918 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 TCRBV5S4A2TA0A5A2 114 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 GOLIM4O00461 696 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 WDR46O15213 610 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 COBLO75128 1261 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 HMMRO75330 724 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 SDR42E1Q8WUS8 393 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 DDRGK1Q96HY6 314 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 DNAJC2Q99543 621 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 VCPKMTQ9H867 229 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 IL1RAPL2Q9NP60 686 aa17.83■□□□□ 0.44
CCDC88B-201ENST00000301897 COPB2P35606 906 aa17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 LRRC41Q15345 812 aa17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 LCORLQ8N3X6 602 aa17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 MAML3Q96JK9 1138 aa17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 GUCD1Q96NT3 240 aa17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC88B-201ENST00000301897 RPAP2Q8IXW5 612 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-201ENST00000301897 SLC44A5Q8NCS7 719 aa17.81■□□□□ 0.44
CCDC88B-201ENST00000301897 ATG4CQ96DT6 458 aa17.81■□□□□ 0.44
CCDC88B-201ENST00000301897 PRDM5Q9NQX1 630 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-201ENST00000301897 PARP14Q460N5 1801 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 RAB11FIP3O75154 756 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 MYCNP04198 464 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 RARBP10826 455 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 ADCYAP1R1P41586 468 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 SMAD3P84022 425 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 HNRNPUQ00839 825 aaKnown RBP eCLIP17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 TRIM60Q495X7 471 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 KIAA1755Q5JYT7 1200 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 SPICE1Q8N0Z3 855 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 KANSL2Q9H9L4 492 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 PDLIM7Q9NR12 457 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 PAG1Q9NWQ8 432 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 DIS3Q9Y2L1 958 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 SMCHD1A6NHR9 2005 aa17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 BAZ2AQ9UIF9 1905 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-201ENST00000301897 CYP2D6P10635 497 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 AKR1B1P15121 316 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 CDK8P49336 464 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 SHHQ15465 462 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 ANO1Q5XXA6 986 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 RNF180Q86T96 592 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 SIAH1Q8IUQ4 282 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 DYNLL2Q96FJ2 89 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms