RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PHF20Q9BVI0 1012 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 PCDHA7Q9UN72 937 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 BRCA1P38398 1863 aaKnown RBP16.44■□□□□ 0.22
C9orf3-202ENST00000297979 NR1I2O75469 434 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 NPM3O75607 178 aaKnown RBP16.44■□□□□ 0.22
C9orf3-202ENST00000297979 TOP1P11387 765 aaKnown RBP16.44■□□□□ 0.22
C9orf3-202ENST00000297979 CACNB3P54284 484 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 RSBN1LQ6PCB5 846 aaPredicted RBP16.44■□□□□ 0.22
C9orf3-202ENST00000297979 SHISA4Q96DD7 197 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 DHX36Q9H2U1 1008 aaKnown RBP16.44■□□□□ 0.22
C9orf3-202ENST00000297979 MAD2L2Q9UI95 211 aa16.44■□□□□ 0.22
C9orf3-202ENST00000297979 CFAP100Q494V2 611 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 ADALQ6DHV7 355 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 FAM198AQ9UFP1 575 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 SCG2P13521 617 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 AKR1B1P15121 316 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 SHMT1P34896 483 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 SLC39A14Q15043 492 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 PFKFB3Q16875 520 aaPredicted RBP16.43■□□□□ 0.22
C9orf3-202ENST00000297979 DALRD3Q5D0E6 543 aaKnown RBP16.43■□□□□ 0.22
C9orf3-202ENST00000297979 CCDC73Q6ZRK6 1079 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 ZFPM1Q8IX07 1006 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 STAG2Q8N3U4 1231 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 CLSTN2Q9H4D0 955 aa16.43■□□□□ 0.22
C9orf3-202ENST00000297979 SIPA1L1O43166 1804 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 A0A1W2PQ27 194 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 A0A1W2PQ64 194 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 A0A1W2PQD8 194 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 RAD17O75943 681 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 VIL1P09327 827 aaKnown RBP16.42■□□□□ 0.22
C9orf3-202ENST00000297979 TCP10Q12799 353 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 R3HDM1Q15032 1099 aaKnown RBP16.42■□□□□ 0.22
C9orf3-202ENST00000297979 TNMDQ9H2S6 317 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 PSMD14O00487 310 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 KRT2P35908 639 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 NR5A1Q13285 461 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 MAP3K11Q16584 847 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 NIM1KQ8IY84 436 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 OXER1Q8TDS5 423 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 GOLPH3LQ9H4A5 285 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 MTMR4Q9NYA4 1195 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 MTMR7Q9Y216 660 aa16.42■□□□□ 0.22
C9orf3-202ENST00000297979 IGKV6D-41A0A0C4DH26 115 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 PALM3A6NDB9 673 aaPredicted RBP16.41■□□□□ 0.22
C9orf3-202ENST00000297979 HSP90AA2PQ14568 343 aaPredicted RBP16.41■□□□□ 0.22
C9orf3-202ENST00000297979 FSIP1Q8NA03 581 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 MRPS27Q92552 414 aaKnown RBP16.41■□□□□ 0.22
C9orf3-202ENST00000297979 LZTS2Q9BRK4 669 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 BRMS1Q9HCU9 246 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 PTPAQ15257 358 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 CAMK4Q16566 473 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 RILPL1Q5EBL4 403 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 TDRD3Q9H7E2 651 aaKnown RBP16.41■□□□□ 0.22
C9orf3-202ENST00000297979 ZNRF3Q9ULT6 936 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 GREB1LQ9C091 1923 aaPredicted RBP16.41■□□□□ 0.22
C9orf3-202ENST00000297979 PPP6R2O75170 966 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 FAM160A1Q05DH4 1040 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 JMYQ8N9B5 988 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 GMLQ99445 158 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 FUCA2Q9BTY2 467 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 PI4KBQ9UBF8 816 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 HDAC9Q9UKV0 1011 aa16.41■□□□□ 0.22
C9orf3-202ENST00000297979 FER1L6Q2WGJ9 1857 aa16.4■□□□□ 0.22
C9orf3-202ENST00000297979 DDTLA6NHG4 134 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-202ENST00000297979 PARP1P09874 1014 aaKnown RBP16.4■□□□□ 0.22
C9orf3-202ENST00000297979 ZSCAN29Q8IWY8 852 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-202ENST00000297979 PIBF1Q8WXW3 757 aa16.4■□□□□ 0.22
C9orf3-202ENST00000297979 PRMT6Q96LA8 375 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-202ENST00000297979 PPP1R1BQ9UD71 204 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-202ENST00000297979 ENTPD3O75355 529 aa16.4■□□□□ 0.22
C9orf3-202ENST00000297979 CCDC17Q96LX7 622 aa16.4■□□□□ 0.22
C9orf3-202ENST00000297979 COL2A1P02458 1487 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-202ENST00000297979 TOB1P50616 345 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-202ENST00000297979 RBM43Q6ZSC3 357 aaKnown RBP16.39■□□□□ 0.21
C9orf3-202ENST00000297979 SH3BP5LQ7L8J4 393 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 ENGASEQ8NFI3 743 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 TAOK3Q9H2K8 898 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 DNAJC18Q9H819 358 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 BAZ2BQ9UIF8 2168 aaKnown RBP16.39■□□□□ 0.21
C9orf3-202ENST00000297979 KLRF2D3W0D1 207 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 TTLL1O95922 423 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 SNW1Q13573 536 aaKnown RBP16.39■□□□□ 0.21
C9orf3-202ENST00000297979 NPY5RQ15761 445 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 AXDND1Q5T1B0 1012 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-202ENST00000297979 SPZ1Q9BXG8 430 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 SH3GLB2Q9NR46 395 aa16.39■□□□□ 0.21
C9orf3-202ENST00000297979 ATRNL1Q5VV63 1379 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 SPDYE2BA6NHP3 402 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 SPDYE6P0CI01 402 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 GOLGA8HP0CJ92 632 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 MARCKSP29966 332 aaPredicted RBP16.38■□□□□ 0.21
C9orf3-202ENST00000297979 NLRP5P59047 1200 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 SLC35G1Q2M3R5 365 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 RASGRP2Q7LDG7 609 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 OGFOD1Q8N543 542 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 RNF214Q8ND24 703 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 SGIP1Q9BQI5 828 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 TRIM34Q9BYJ4 488 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.38■□□□□ 0.21
C9orf3-202ENST00000297979 TMOD2Q9NZR1 351 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms