RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 USP17L24Q0WX57 530 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 TRDNQ13061 729 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 IKQ13123 557 aaPredicted RBP7.72□□□□□ -1.17
CD44-204ENST00000279452 RALYLQ86SE5 291 aaKnown RBP7.72□□□□□ -1.17
CD44-204ENST00000279452 ANKRD13CQ8N6S4 541 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 STAG1Q8WVM7 1258 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 ESR2Q92731 530 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 ZKSCAN3Q9BRR0 538 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 VCPKMTQ9H867 229 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 ANAPC4Q9UJX5 808 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.72□□□□□ -1.17
CD44-204ENST00000279452 SLC45A1Q9Y2W3 748 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 TRIM17Q9Y577 477 aa7.72□□□□□ -1.17
CD44-204ENST00000279452 RBM8AQ9Y5S9 174 aaKnown RBP7.72□□□□□ -1.17
CD44-204ENST00000279452 B4E1Z4 1266 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 ORC4O43929 436 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 NMT2O60551 498 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 KDM4AO75164 1064 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 FLOT1O75955 427 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 FMNL1O95466 1100 aaPredicted RBP7.71□□□□□ -1.18
CD44-204ENST00000279452 PCP11498 1178 aaKnown RBP7.71□□□□□ -1.18
CD44-204ENST00000279452 ARHGEF6Q15052 776 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 CCDC96Q2M329 555 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 PPP4R3BQ5MIZ7 849 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 FAM83BQ5T0W9 1011 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 WDR78Q5VTH9 848 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 CTU1Q7Z7A3 348 aaKnown RBP7.71□□□□□ -1.18
CD44-204ENST00000279452 IQCA1Q86XH1 822 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 NEDD1Q8NHV4 660 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 LPAR1Q92633 364 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 C12orf42Q96LP6 360 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 NUP88Q99567 741 aaPredicted RBP7.71□□□□□ -1.18
CD44-204ENST00000279452 UBAC1Q9BSL1 405 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.71□□□□□ -1.18
CD44-204ENST00000279452 CFHR5Q9BXR6 569 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 KRT23Q9C075 422 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 NBPF3Q9H094 633 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 CNNM2Q9H8M5 875 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 MTMR4Q9NYA4 1195 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 TMX2Q9Y320 296 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 CTDP1Q9Y5B0 961 aaPredicted RBP7.71□□□□□ -1.18
CD44-204ENST00000279452 LOC285556D6RIA3 1793 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 PHIPQ8WWQ0 1821 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 PLIN4Q96Q06 1357 aa7.71□□□□□ -1.18
CD44-204ENST00000279452 MYH8P13535 1937 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 TNPO2O14787 897 aaKnown RBP7.7□□□□□ -1.18
CD44-204ENST00000279452 WDR46O15213 610 aaKnown RBP7.7□□□□□ -1.18
CD44-204ENST00000279452 NDUFB10O96000 172 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 GCLCP48506 637 aaPredicted RBP7.7□□□□□ -1.18
CD44-204ENST00000279452 SLC4A3P48751 1232 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 FCGRTP55899 365 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 HERVK_113P62684 666 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 LACTBP83111 547 aaPredicted RBP7.7□□□□□ -1.18
CD44-204ENST00000279452 PLS1Q14651 629 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 KIAA1755Q5JYT7 1200 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 C17orf99Q6UX52 265 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 P2RX7Q99572 595 aaKnown RBP7.7□□□□□ -1.18
CD44-204ENST00000279452 ARHGAP39Q9C0H5 1083 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 EFCC1Q9HA90 598 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 NYAP2Q9P242 653 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 TACC3Q9Y6A5 838 aa7.7□□□□□ -1.18
CD44-204ENST00000279452 IGKV6D-41A0A0C4DH26 115 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 ERICH2A1L162 156 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 F5H6K3 240 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 PEX10O60683 326 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 CYP21A2P08686 494 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 HOXA7P31268 230 aaPredicted RBP7.69□□□□□ -1.18
CD44-204ENST00000279452 SLC1A4P43007 532 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 PSMC4P43686 418 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 KLRC3Q07444 240 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 FAM110CQ1W6H9 321 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 NOM1Q5C9Z4 860 aaKnown RBP7.69□□□□□ -1.18
CD44-204ENST00000279452 RNF20Q5VTR2 975 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 SLFN13Q68D06 897 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 CATSPERGQ6ZRH7 1159 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 SIAH1Q8IUQ4 282 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 GPRC5AQ8NFJ5 357 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 NCOA7Q8NI08 942 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 GTF3C2Q8WUA4 911 aaPredicted RBP7.69□□□□□ -1.18
CD44-204ENST00000279452 MAP4K1Q92918 833 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 KIFC2Q96AC6 838 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 MCOLN1Q9GZU1 580 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 LSG1Q9H089 658 aaKnown RBP7.69□□□□□ -1.18
CD44-204ENST00000279452 KAT14Q9H8E8 782 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 IL17RBQ9NRM6 502 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 ADGRA2Q96PE1 1338 aa7.69□□□□□ -1.18
CD44-204ENST00000279452 SPDYE16A6NNV3 312 aaPredicted RBP7.68□□□□□ -1.18
CD44-204ENST00000279452 E7EWF7 191 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 SLC27A2O14975 620 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 REC8O95072 547 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 FGRP09769 529 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 BCRP11274 1271 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 TOP1P11387 765 aaKnown RBP7.68□□□□□ -1.18
CD44-204ENST00000279452 BMP3P12645 472 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 MCCP23508 829 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 HOXD10P28358 340 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 DSG3P32926 999 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 CCNA1P78396 465 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 COG2Q14746 738 aa7.68□□□□□ -1.18
CD44-204ENST00000279452 SART3Q15020 963 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms