RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 RMND1Q9NWS8 449 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 PRDM4Q9UKN5 801 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 LAMB4A4D0S4 1761 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 TSPY2A6NKD2 308 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 B4E1Z4 1266 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 MYO1BO43795 1136 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 PPP2R5BQ15173 497 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 ATRIPQ8WXE1 791 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 RABGGTAQ92696 567 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 FTOQ9C0B1 505 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 ZHX3Q9H4I2 956 aa12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 ANGEL1Q9UNK9 670 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-201ENST00000266546 CUTAO60888 179 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 SSBP05455 408 aaKnown RBP eCLIP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 HLA-DOAP06340 250 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 CYP21A2P08686 494 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 UBA7P41226 1012 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 SCRN1Q12765 414 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 KIF5AQ12840 1032 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 IFNL3Q8IZI9 196 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 CELF1Q92879 486 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 NWD2Q9ULI1 1742 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 CCT6AP40227 531 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 SOGA3Q5TF21 947 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 ALDH8A1Q9H2A2 487 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 LUC7L2Q9Y383 392 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 MED23Q9ULK4 1368 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 POLR2DO15514 142 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 ZEB2O60315 1214 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 ONECUT3O60422 494 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 PNOCQ13519 176 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 CCDC122Q5T0U0 273 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 AKNAD1Q5T1N1 836 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 CC2D2BQ6DHV5 1058 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 CCDC91Q7Z6B0 441 aa12.97□□□□□ -0.33
CLSTN3-201ENST00000266546 PPEF1O14829 653 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 CTIFO43310 598 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 TACC1O75410 805 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 IFFO1Q0D2I5 559 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 SPECC1Q5M775 1068 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 PIH1D3Q9NQM4 214 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 BMP2KQ9NSY1 1161 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 FANCLQ9NW38 375 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 PHLPP2Q6ZVD8 1323 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 A0A1W2PQ27 194 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 A0A1W2PQ64 194 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 A0A1W2PQD8 194 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 M0R2C6 588 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 GNAQP50148 359 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 UBXN1Q04323 297 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 ENOX2Q16206 610 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 TRMT44Q8IYL2 757 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 CRAMP1Q96RY5 1269 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 PLCD4Q9BRC7 762 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 ZKSCAN3Q9BRR0 538 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 BRIP1Q9BX63 1249 aa12.96□□□□□ -0.33
CLSTN3-201ENST00000266546 CCDC194A0A1B0GVG4 234 aa12.96□□□□□ -0.34
CLSTN3-201ENST00000266546 USP27XA6NNY8 438 aa12.96□□□□□ -0.34
CLSTN3-201ENST00000266546 CMA1P23946 247 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 RESTQ13127 1097 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 ALX1Q15699 326 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 FAM114A1Q8IWE2 563 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 CCDC43Q96MW1 224 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 ATP8A2Q9NTI2 1148 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 ARPP21Q9UBL0 812 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 JAG2Q9Y219 1238 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 ABCA3Q99758 1704 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 PLSCR1O15162 318 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 RILPL1Q5EBL4 403 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 C2CD5Q86YS7 1000 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 MCM9Q9NXL9 1143 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 FGFR1OPO95684 399 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 LONRF2Q1L5Z9 754 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 IFIT1BQ5T764 474 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 KRT40Q6A162 431 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 FCHSD1Q86WN1 690 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 TMTC1Q8IUR5 882 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 PGBD1Q96JS3 809 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 PDE11AQ9HCR9 933 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 RTEL1Q9NZ71 1219 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 PSMA7O14818 248 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 NF2P35240 595 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 POSTNQ15063 836 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 WDR78Q5VTH9 848 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 PRR5LQ6MZQ0 368 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 PI16Q6UXB8 463 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 MASTLQ96GX5 879 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 CCDC42Q96M95 316 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 VPS16Q9H269 839 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 KAT14Q9H8E8 782 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 HDAC9Q9UKV0 1011 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 AK9Q5TCS8 1911 aa12.95□□□□□ -0.34
CLSTN3-201ENST00000266546 ATRNO75882 1429 aa12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 GOLGA6CA6NDK9 693 aa12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 STX10O60499 249 aa12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 GOLGA6DP0CG33 693 aa12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 CNKSR2Q8WXI2 1034 aa12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 PUS7LQ9H0K6 701 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 GOLGA6AQ9NYA3 693 aa12.94□□□□□ -0.34
CLSTN3-201ENST00000266546 RRP15Q9Y3B9 282 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms