RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 VCPKMTQ9H867 229 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L15C9J2P7 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L13C9JLJ4 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L11C9JVI0 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L18D6R9N7 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L22D6RA61 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L17D6RBQ6 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L19D6RCP7 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L20D6RJB6 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 TTLL1O95922 423 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 USP17L24Q0WX57 530 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 LPAR1Q92633 364 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 MKL1Q969V6 931 aa19.8■□□□□ 0.76
SDCBP-201ENST00000260130 KIAA1755Q5JYT7 1200 aa19.79■□□□□ 0.76
SDCBP-201ENST00000260130 PPP4R3BQ5MIZ7 849 aa19.79■□□□□ 0.76
SDCBP-201ENST00000260130 LSG1Q9H089 658 aaKnown RBP19.79■□□□□ 0.76
SDCBP-201ENST00000260130 GOPCQ9HD26 462 aa19.79■□□□□ 0.76
SDCBP-201ENST00000260130 IL17RBQ9NRM6 502 aa19.79■□□□□ 0.76
SDCBP-201ENST00000260130 GREB1LQ9C091 1923 aaPredicted RBP19.79■□□□□ 0.76
SDCBP-201ENST00000260130 CATSPERGQ6ZRH7 1159 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 SPICE1Q8N0Z3 855 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 P2RX7Q99572 595 aaKnown RBP19.78■□□□□ 0.76
SDCBP-201ENST00000260130 RPAP3Q9H6T3 665 aaPredicted RBP19.78■□□□□ 0.76
SDCBP-201ENST00000260130 ANO2Q9NQ90 1003 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 CYP21A2P08686 494 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 BCRP11274 1271 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 NT5C2P49902 561 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 ESR2Q92731 530 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 ERO1AQ96HE7 468 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 RBM8AQ9Y5S9 174 aaKnown RBP19.78■□□□□ 0.76
SDCBP-201ENST00000260130 NEDD4P46934 1319 aa19.78■□□□□ 0.76
SDCBP-201ENST00000260130 NMT2O60551 498 aa19.77■□□□□ 0.76
SDCBP-201ENST00000260130 GCLCP48506 637 aaPredicted RBP19.77■□□□□ 0.76
SDCBP-201ENST00000260130 TCP11L1Q9NUJ3 509 aa19.77■□□□□ 0.76
SDCBP-201ENST00000260130 SYNPO2Q9UMS6 1093 aa19.77■□□□□ 0.76
SDCBP-201ENST00000260130 STX8Q9UNK0 236 aa19.77■□□□□ 0.76
SDCBP-201ENST00000260130 CASP8AP2Q9UKL3 1982 aa19.77■□□□□ 0.76
SDCBP-201ENST00000260130 RAD21O60216 631 aa19.77■□□□□ 0.75
SDCBP-201ENST00000260130 F5H6K3 240 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 WDR46O15213 610 aaKnown RBP19.76■□□□□ 0.75
SDCBP-201ENST00000260130 HERVK_113P62684 666 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 KLRC3Q07444 240 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 NKX2-3Q8TAU0 364 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 CD99L2Q8TCZ2 262 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 KRT23Q9C075 422 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 CNNM2Q9H8M5 875 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 NOVP48745 357 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 ANKRD13CQ8N6S4 541 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 TANGO6Q9C0B7 1094 aa19.76■□□□□ 0.75
SDCBP-201ENST00000260130 B4E1Z4 1266 aa19.75■□□□□ 0.75
SDCBP-201ENST00000260130 KDM4AO75164 1064 aa19.75■□□□□ 0.75
SDCBP-201ENST00000260130 LACTBP83111 547 aaPredicted RBP19.75■□□□□ 0.75
SDCBP-201ENST00000260130 LRRC47Q8N1G4 583 aaKnown RBP19.75■□□□□ 0.75
SDCBP-201ENST00000260130 COG2Q14746 738 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 KIF22Q14807 665 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 NFKBIBQ15653 356 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 CTU1Q7Z7A3 348 aaKnown RBP19.74■□□□□ 0.75
SDCBP-201ENST00000260130 LAMA4Q16363 1823 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 FAM110CQ1W6H9 321 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 GMCL1P1Q8NEA9 526 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 GTF3C2Q8WUA4 911 aaPredicted RBP19.74■□□□□ 0.75
SDCBP-201ENST00000260130 TTC14Q96N46 770 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 HOXC10Q9NYD6 342 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 ZSWIM5Q9P217 1185 aa19.74■□□□□ 0.75
SDCBP-201ENST00000260130 NDUFB10O96000 172 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 SLC4A3P48751 1232 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 TRDNQ13061 729 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 ARHGEF6Q15052 776 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 NECTIN1Q15223 517 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 CAP1Q01518 475 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 IQCA1Q86XH1 822 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 RBPJLQ9UBG7 517 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 MORF4L1Q9UBU8 362 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 TAF6LQ9Y6J9 622 aa19.73■□□□□ 0.75
SDCBP-201ENST00000260130 E7EWF7 191 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 FLOT1O75955 427 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 FAM83BQ5T0W9 1011 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 LBX2Q6XYB7 198 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 ZKSCAN3Q9BRR0 538 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 ARHGAP39Q9C0H5 1083 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 EFCC1Q9HA90 598 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 TRIM17Q9Y577 477 aa19.72■□□□□ 0.75
SDCBP-201ENST00000260130 SPDYE16A6NNV3 312 aaPredicted RBP19.71■□□□□ 0.75
SDCBP-201ENST00000260130 CCDC178Q5BJE1 867 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 SLFN13Q68D06 897 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 POTEEQ6S8J3 1075 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 NUP88Q99567 741 aaPredicted RBP19.71■□□□□ 0.75
SDCBP-201ENST00000260130 TXNRD2Q9NNW7 524 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 TOP1P11387 765 aaKnown RBP19.71■□□□□ 0.75
SDCBP-201ENST00000260130 PSMC4P43686 418 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 CREB3L3Q68CJ9 461 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 RCSD1Q6JBY9 416 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 OTOP1Q7RTM1 612 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 GPRC5AQ8NFJ5 357 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 TMEM47Q9BQJ4 181 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 RABGAP1Q9Y3P9 1069 aa19.71■□□□□ 0.75
SDCBP-201ENST00000260130 SLC27A2O14975 620 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 ECM2O94769 699 aaPredicted RBP19.7■□□□□ 0.74
SDCBP-201ENST00000260130 DSG3P32926 999 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 DGKHQ86XP1 1220 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms