RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 SCG2P13521 617 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 STAG2Q8N3U4 1231 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 SHISA4Q96DD7 197 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 PI4KBQ9UBF8 816 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 hCG_1642624A0A1W2PR95 340 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 TCP10Q12799 353 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 AGBL3Q8NEM8 1001 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 CCDC17Q96LX7 622 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 TSPY26PQ9H489 355 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 SF3A1Q15459 793 aaKnown RBP17.16■□□□□ 0.34
CCDC47-201ENST00000225726 PPP4R3BQ5MIZ7 849 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 PRMT6Q96LA8 375 aaPredicted RBP17.16■□□□□ 0.34
CCDC47-201ENST00000225726 DACT1Q9NYF0 836 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 PPP1R1BQ9UD71 204 aaPredicted RBP17.16■□□□□ 0.34
CCDC47-201ENST00000225726 PCDHA7Q9UN72 937 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 ATRNL1Q5VV63 1379 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 DDTLA6NHG4 134 aaPredicted RBP17.16■□□□□ 0.34
CCDC47-201ENST00000225726 KRT2P35908 639 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 SLC39A14Q15043 492 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 CCAR1Q8IX12 1150 aaKnown RBP17.16■□□□□ 0.34
CCDC47-201ENST00000225726 NUP62CLQ9H1M0 184 aa17.16■□□□□ 0.34
CCDC47-201ENST00000225726 A0A1W2PQ27 194 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 A0A1W2PQ64 194 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 A0A1W2PQD8 194 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 SPDYE2BA6NHP3 402 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 SPDYE6P0CI01 402 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 ADALQ6DHV7 355 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 SH3BP5LQ7L8J4 393 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 BRMS1Q9HCU9 246 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 PARP1P09874 1014 aaKnown RBP17.15■□□□□ 0.34
CCDC47-201ENST00000225726 OGFOD1Q8N543 542 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 TMOD2Q9NZR1 351 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 FOXP4Q8IVH2 680 aaPredicted RBP17.15■□□□□ 0.34
CCDC47-201ENST00000225726 ZSCAN29Q8IWY8 852 aaPredicted RBP17.15■□□□□ 0.34
CCDC47-201ENST00000225726 CLSTN2Q9H4D0 955 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 DNAJC18Q9H819 358 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 SH3GLB2Q9NR46 395 aa17.15■□□□□ 0.34
CCDC47-201ENST00000225726 DLGAP5Q15398 846 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 OXER1Q8TDS5 423 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 SPZ1Q9BXG8 430 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 TRIM34Q9BYJ4 488 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 NR1I2O75469 434 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 TTLL1O95922 423 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 PTGER2P43116 358 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 RILPL1Q5EBL4 403 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 CCDC73Q6ZRK6 1079 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 METTL16Q86W50 562 aaKnown RBP17.14■□□□□ 0.33
CCDC47-201ENST00000225726 RBSNQ9H1K0 784 aa17.14■□□□□ 0.33
CCDC47-201ENST00000225726 PPP6R2O75170 966 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 SMARCA1P28370 1054 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 NR5A1Q13285 461 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 PTPAQ15257 358 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 JMYQ8N9B5 988 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 MTMR14Q8NCE2 650 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 GOLPH3LQ9H4A5 285 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 MTMR7Q9Y216 660 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 NFKBIEO00221 500 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 JDP2Q8WYK2 163 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 MRPS27Q92552 414 aaKnown RBP17.13■□□□□ 0.33
CCDC47-201ENST00000225726 ZBTB12Q9Y330 459 aaPredicted RBP17.13■□□□□ 0.33
CCDC47-201ENST00000225726 KLRF2D3W0D1 207 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 CXCL9Q07325 125 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 HSP90AA2PQ14568 343 aaPredicted RBP17.13■□□□□ 0.33
CCDC47-201ENST00000225726 FSIP1Q8NA03 581 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 LTBP3Q9NS15 1303 aa17.13■□□□□ 0.33
CCDC47-201ENST00000225726 MAP3K11Q16584 847 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 SLC35G1Q2M3R5 365 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 CIAPIN1Q6FI81 312 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 TATDN1Q6P1N9 297 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 FAM177A1Q8N128 213 aaPredicted RBP17.12■□□□□ 0.33
CCDC47-201ENST00000225726 ZNF70Q9UC06 446 aaPredicted RBP17.12■□□□□ 0.33
CCDC47-201ENST00000225726 PSDA5PKW4 1024 aaPredicted RBP17.12■□□□□ 0.33
CCDC47-201ENST00000225726 MPHOSPH10O00566 681 aaKnown RBP17.12■□□□□ 0.33
CCDC47-201ENST00000225726 FAM160A1Q05DH4 1040 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 TNMDQ9H2S6 317 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 ARFGEF1Q9Y6D6 1849 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 TOB1P50616 345 aaPredicted RBP17.12■□□□□ 0.33
CCDC47-201ENST00000225726 RBM10P98175 930 aaKnown RBP17.12■□□□□ 0.33
CCDC47-201ENST00000225726 NPY5RQ15761 445 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 PIBF1Q8WXW3 757 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 CLIP2Q9UDT6 1046 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 BCS1LQ9Y276 419 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 MYH4Q9Y623 1939 aa17.12■□□□□ 0.33
CCDC47-201ENST00000225726 CYTH3O43739 400 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 GOLGA8HP0CJ92 632 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 PDHBP11177 359 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 CALML3P27482 149 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 NLRP5P59047 1200 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 SPDYE2Q495Y8 402 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 CERKLQ49MI3 558 aaPredicted RBP17.11■□□□□ 0.33
CCDC47-201ENST00000225726 ASPRV1Q53RT3 343 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 ENGASEQ8NFI3 743 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 TNFRSF25Q93038 417 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.11■□□□□ 0.33
CCDC47-201ENST00000225726 USP17L5A8MUK1 530 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 SNHG28P0DPA3 235 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 AXDND1Q5T1B0 1012 aaPredicted RBP17.11■□□□□ 0.33
CCDC47-201ENST00000225726 USP17L2Q6R6M4 530 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 RBM43Q6ZSC3 357 aaKnown RBP17.11■□□□□ 0.33
CCDC47-201ENST00000225726 FUCA2Q9BTY2 467 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms