RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 NAA15Q9BXJ9 866 aaKnown RBP16.4■□□□□ 0.22
PTPRA-201ENST00000216877 CHPF2Q9P2E5 772 aa16.4■□□□□ 0.22
PTPRA-201ENST00000216877 TRPM3Q9HCF6 1732 aaPredicted RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 CPSF1Q10570 1443 aaKnown RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 TNRQ92752 1358 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 MAP3K5Q99683 1374 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 PPP1R37O75864 691 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 TTMPQ5BVD1 217 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 TBC1D1Q86TI0 1168 aaPredicted RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 NBPF5PQ86XG9 351 aaPredicted RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 ALG1Q9BT22 464 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 ACEP12821 1306 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 BMP6P22004 513 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 TSEN2Q8NCE0 465 aaKnown RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 MYCBPAPQ8TBZ2 947 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 ATP7BP35670 1465 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 SMIM24O75264 130 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 EEF2KMTQ96G04 330 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 BIN2Q9UBW5 565 aaPredicted RBP16.39■□□□□ 0.21
PTPRA-201ENST00000216877 TUBE1Q9UJT0 475 aa16.39■□□□□ 0.21
PTPRA-201ENST00000216877 HMGB1P09429 215 aaKnown RBP16.38■□□□□ 0.21
PTPRA-201ENST00000216877 FDPSP14324 419 aaKnown RBP16.38■□□□□ 0.21
PTPRA-201ENST00000216877 LTKP29376 864 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 SLC39A14Q15043 492 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 RASSF8Q8NHQ8 419 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 ALDH1L1O75891 902 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 VAV2P52735 878 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 RALYLQ86SE5 291 aaKnown RBP16.38■□□□□ 0.21
PTPRA-201ENST00000216877 ZIM3Q96PE6 472 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 STRCQ7RTU9 1775 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 ADGRL3Q9HAR2 1447 aa16.38■□□□□ 0.21
PTPRA-201ENST00000216877 LGR5O75473 907 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 ERVK-24P63145 666 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 MCMDC2Q4G0Z9 681 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 NFXL1Q6ZNB6 911 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 BRAPQ7Z569 592 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 MLKLQ8NB16 471 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 DIAPH2O60879 1101 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 INHBEP58166 350 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 CYP27A1Q02318 531 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 NR1I3Q14994 352 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 WASHC4Q2M389 1173 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 VPS37DQ86XT2 251 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 EHD2Q9NZN4 543 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 METP08581 1390 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 RASSF9O75901 435 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 UBXN1Q04323 297 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 CACNA2D3Q8IZS8 1091 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 PHKBQ93100 1093 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 NOD2Q9HC29 1040 aa16.37■□□□□ 0.21
PTPRA-201ENST00000216877 KCNA6P17658 529 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 KCTD19Q17RG1 926 aaPredicted RBP16.36■□□□□ 0.21
PTPRA-201ENST00000216877 CCDC96Q2M329 555 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 WLSQ5T9L3 541 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 ATP6V0A4Q9HBG4 840 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 KRT86O43790 486 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 PAFAH1B1P43034 410 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 PTGISQ16647 500 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 NBPF9Q3BBW0 867 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 C11orf91Q3C1V1 193 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 C3orf20Q8ND61 904 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 CAMTA1Q9Y6Y1 1673 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 PDE2AO00408 941 aaPredicted RBP16.36■□□□□ 0.21
PTPRA-201ENST00000216877 GRIK3Q13003 919 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 C8orf74Q6P047 294 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 ENOX1Q8TC92 643 aaKnown RBP16.36■□□□□ 0.21
PTPRA-201ENST00000216877 KCNV2Q8TDN2 545 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 NFU1Q9UMS0 254 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 STK38LQ9Y2H1 464 aa16.36■□□□□ 0.21
PTPRA-201ENST00000216877 GYPCP04921 128 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 TMOD1P28289 359 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 TRAF1Q13077 416 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 CYFIP2Q96F07 1278 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 DNM1LO00429 736 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 NDUFA10O95299 355 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 ANP32DO95626 131 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 FAM133BQ5BKY9 247 aaKnown RBP16.35■□□□□ 0.21
PTPRA-201ENST00000216877 SH3GL2Q99962 352 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.35■□□□□ 0.21
PTPRA-201ENST00000216877 E7EWF7 191 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 RTN2O75298 545 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 MICU3Q86XE3 530 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 SMCR8Q8TEV9 937 aaPredicted RBP16.35■□□□□ 0.21
PTPRA-201ENST00000216877 HVCN1Q96D96 273 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 ACTR5Q9H9F9 607 aaPredicted RBP16.35■□□□□ 0.21
PTPRA-201ENST00000216877 CDK12Q9NYV4 1490 aaPredicted RBP16.35■□□□□ 0.21
PTPRA-201ENST00000216877 SYNRGQ9UMZ2 1314 aa16.35■□□□□ 0.21
PTPRA-201ENST00000216877 SASH1O94885 1247 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 PYGLP06737 847 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 KIF23Q02241 960 aaPredicted RBP16.34■□□□□ 0.21
PTPRA-201ENST00000216877 FAM228AQ86W67 206 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 CCDC63Q8NA47 563 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 STRN4Q9NRL3 753 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 ZNHIT6Q9NWK9 470 aaKnown RBP16.34■□□□□ 0.21
PTPRA-201ENST00000216877 CTNND2Q9UQB3 1225 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 MAP3K2Q9Y2U5 619 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 DUSP10Q9Y6W6 482 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 A6NNZ2 444 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 USP4Q13107 963 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms