RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Igfbp6P47880 238 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Dpp8Q80YA7 892 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Fam178bQ24JP3 464 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ccdc57Q6PHN1 1016 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gpr108Q91WD0 569 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Pcdha7Q91Y13 937 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Pcdha12Q91Y18 950 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Cyp19a1P28649 503 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ankk1Q8BZ25 745 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 PaoxQ8C0L6 504 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Cbx6Q9DBY5 414 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Usp53P15975 1069 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 DesP31001 469 aaKnown RBP17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ttll4Q80UG8 1193 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Usp37Q8C0R0 979 aa17.31■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Apol7aB2RT54 418 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Actn3O88990 900 aaKnown RBP17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gramd4Q8CB44 633 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 4921504E06RikQ8CET2 560 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gpaa1Q9WTK3 621 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Zfp42P22227 288 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gm5592Q3V0A6 857 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Pim2Q62070 370 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Lztfl1Q9JHQ5 299 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Plagl1Q9JLQ4 704 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Olfr247E9PVJ7 320 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Olfr819K7N727 320 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Copb2O55029 905 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gbp1Q01514 589 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ddx31Q6NZQ2 687 aaKnown RBP17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Mei4Q8BRM6 389 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ubxn1Q922Y1 297 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 HelbQ6NVF4 1074 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Vps36Q91XD6 386 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Sept14Q9DA97 430 aa17.3■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Cyp3a59D3Z2W7 503 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Rapgef1Q3UHC1 1224 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Pus7lQ8CE46 702 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ebag9Q9D0V7 213 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 PdiltQ9DAN1 588 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Cps1Q8C196 1500 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Il7P10168 154 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Fdx1P46656 188 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Exosc10P56960 887 aaKnown RBP17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Zfp781Q0P5U5 243 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ces3aQ63880 571 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Herc4Q6PAV2 1057 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Otop3Q80UF9 577 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Caps2Q8BUG5 550 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Terb1Q8C0V1 768 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ces3bQ8VCU1 571 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gm38392E9Q2A2 434 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Cdr2P97817 455 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 DpydQ8CHR6 1025 aa17.29■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Rpl13P47963 211 aaKnown RBP17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Sestd1Q80UK0 696 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Riox2Q8CD15 465 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Kansl3A2RSY1 903 aaKnown RBP17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ankrd13aQ80UP5 588 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 McamQ8R2Y2 648 aaKnown RBP17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gle1Q8R322 699 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Pex3Q9QXY9 372 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Carmil3Q3UFQ8 1375 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 E9QMW4 1145 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Galnt17Q7TT15 598 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Dclk3Q8BWQ5 790 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Amhr2Q8K592 568 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Golph3lQ8R088 285 aaKnown RBP17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Kcnh4A2A5F7 1018 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ppp1r9aH3BJD6 1292 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Gucy1b3O54865 620 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 LtkP08923 888 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 DnttP09838 530 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ccpg1Q640L3 753 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Cplx4Q80WM3 160 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Ybx3Q9JKB3 361 aaKnown RBP17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Dctpp1Q9QY93 170 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Magi2Q9WVQ1 1275 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Znf394Q9Z1D9 521 aa17.28■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Bpifb4A2BGH0 617 aa17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Mcm5P49718 733 aa17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Enox2Q8R0Z2 598 aa17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Telo2Q9DC40 840 aaKnown RBP17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Myom1Q62234 1667 aaKnown RBP17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Zfpm1O35615 995 aa17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Tnnc1P19123 161 aa17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Nlrp5Q9R1M5 1163 aa17.27■□□□□ 0.36
Ccdc88b-201ENSMUST00000113440 Psmc2P46471 433 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Cct6aP80317 531 aaKnown RBP17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Gbp8Q2V6D6 525 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Bbs9Q811G0 885 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Map10Q8BJS7 891 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Phf23Q8BSN5 401 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Tfap4Q9JIZ5 338 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Rps6ka4Q9Z2B9 773 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Sik3Q6P4S6 1311 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Parp2O88554 559 aa17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 SfpqQ8VIJ6 699 aaKnown RBP17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 PpanQ91YU8 470 aaKnown RBP17.27■□□□□ 0.35
Ccdc88b-201ENSMUST00000113440 Akap8Q9DBR0 687 aaKnown RBP17.27■□□□□ 0.35
Retrieved 100 of 22,080 RNA–protein pairs in 14 ms