RNA–Protein interactions for RNA: YIL084C

SDS3, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene SDS3, Length 984 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SDS3	YIL084C	MCM3	P24279	971 aa	Known RBP	4.58	□□□□□ -1.68
SDS3	YIL084C	PWP2	P25635	923 aa	Known RBP	4.58	□□□□□ -1.68
SDS3	YIL084C	PPZ2	P33329	710 aa		4.58	□□□□□ -1.68
SDS3	YIL084C	CAB2	P40506	365 aa		4.58	□□□□□ -1.68
SDS3	YIL084C	SAP4	P53036	818 aa		4.58	□□□□□ -1.68
SDS3	YIL084C	YGL117W	P53133	265 aa		4.58	□□□□□ -1.68
SDS3	YIL084C	RPT4	P53549	437 aa	Known RBP	4.58	□□□□□ -1.68
SDS3	YIL084C	FCP1	Q03254	732 aa		4.58	□□□□□ -1.68
SDS3	YIL084C	ATG16	Q03818	150 aa		4.58	□□□□□ -1.68
SDS3	YIL084C	EIS1	Q05050	843 aa	Known RBP	4.58	□□□□□ -1.68
SDS3	YIL084C	SLK19	Q08581	821 aa	Known RBP	4.58	□□□□□ -1.68
SDS3	YIL084C	AAC1	P04710	309 aa		4.57	□□□□□ -1.68
SDS3	YIL084C	ADE5,7	P07244	802 aa	Known RBP	4.57	□□□□□ -1.68
SDS3	YIL084C	RNR3	P21672	869 aa	Known RBP	4.57	□□□□□ -1.68
SDS3	YIL084C	ILV6	P25605	309 aa	Known RBP	4.57	□□□□□ -1.68
SDS3	YIL084C	ADY2	P25613	283 aa		4.57	□□□□□ -1.68
SDS3	YIL084C	PRE2	P30656	287 aa	Known RBP	4.57	□□□□□ -1.68
SDS3	YIL084C	MRPL9	P31334	269 aa		4.57	□□□□□ -1.68
SDS3	YIL084C	CDC5	P32562	705 aa		4.57	□□□□□ -1.68
SDS3	YIL084C	VPS24	P36095	224 aa	Known RBP	4.57	□□□□□ -1.68
SDS3	YIL084C	PAC2	P39937	518 aa		4.57	□□□□□ -1.68
SDS3	YIL084C	CPR6	P53691	371 aa	Known RBP	4.57	□□□□□ -1.68
SDS3	YIL084C	ULA1	Q12059	462 aa		4.57	□□□□□ -1.68
SDS3	YIL084C	LYS2	P07702	1392 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	YMR084W	A2P2R3	262 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	YCR061W	P25639	631 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	KRE2	P27809	442 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	SWC3	P31376	625 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	MRS6	P32864	603 aa	Known RBP	4.56	□□□□□ -1.68
SDS3	YIL084C	YPT10	P38146	199 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	SPC72	P39723	622 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	ATG21	Q02887	496 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	AIM6	Q07716	390 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	NDJ1	Q12366	352 aa		4.56	□□□□□ -1.68
SDS3	YIL084C	RPL7A	P05737	244 aa	Known RBP	4.55	□□□□□ -1.68
SDS3	YIL084C	RIT1	P23796	513 aa		4.55	□□□□□ -1.68
SDS3	YIL084C	MRPL36	P36531	177 aa		4.55	□□□□□ -1.68
SDS3	YIL084C	ARB1	P40024	610 aa	Known RBP	4.55	□□□□□ -1.68
SDS3	YIL084C	LAS21	P40367	830 aa		4.55	□□□□□ -1.68
SDS3	YIL084C	OPT1	P40897	799 aa		4.55	□□□□□ -1.68
SDS3	YIL084C	YPL108W	Q02872	168 aa	Predicted RBP	4.55	□□□□□ -1.68
SDS3	YIL084C	WAR1	Q03631	944 aa		4.55	□□□□□ -1.68
SDS3	YIL084C	RPL7B	Q12213	244 aa	Known RBP	4.55	□□□□□ -1.68
SDS3	YIL084C	YER175W-A	Q8TGU4	54 aa		4.55	□□□□□ -1.68
SDS3	YIL084C	TUB1	P09733	447 aa	Known RBP	4.54	□□□□□ -1.68
SDS3	YIL084C	APA1	P16550	321 aa	Known RBP	4.54	□□□□□ -1.68
SDS3	YIL084C	MDM10	P18409	493 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	PMA2	P19657	947 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	AAD3	P25612	363 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	YMC1	P32331	307 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	SPL2	P38839	148 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	MTG2	P38860	518 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	MAM1	P40065	302 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	PSF2	P40359	213 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	FMP30	Q02883	468 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	ARG7	Q04728	441 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	BLS1	Q06071	122 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	ARO10	Q06408	635 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	PSR2	Q07949	397 aa		4.54	□□□□□ -1.68
SDS3	YIL084C	SSK22	P25390	1331 aa	Predicted RBP	4.53	□□□□□ -1.68
SDS3	YIL084C	ADE3	P07245	946 aa	Known RBP	4.53	□□□□□ -1.68
SDS3	YIL084C	HEM1	P09950	548 aa	Predicted RBP	4.53	□□□□□ -1.68
SDS3	YIL084C	CLB4	P24871	460 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	DPB3	P27344	201 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	DBF20	P32328	564 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	RIX1	P38883	763 aa	Predicted RBP	4.53	□□□□□ -1.68
SDS3	YIL084C	RAD26	P40352	1085 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	SAP185	P40856	1058 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	ESF2	P53743	316 aa	Known RBP	4.53	□□□□□ -1.68
SDS3	YIL084C	PDS5	Q04264	1277 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	ICL2	Q12031	575 aa		4.53	□□□□□ -1.68
SDS3	YIL084C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
SDS3	YIL084C	PDE1	P22434	369 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	SWI4	P25302	1093 aa	Known RBP	4.52	□□□□□ -1.69
SDS3	YIL084C	MGM1	P32266	881 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	GCD7	P32502	381 aa	Predicted RBP	4.52	□□□□□ -1.69
SDS3	YIL084C	FUI1	P38196	639 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	FSH1	P38777	243 aa	Known RBP	4.52	□□□□□ -1.69
SDS3	YIL084C	IES5	P40060	125 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	PUG1	P40100	303 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	RPT2	P40327	437 aa	Known RBP	4.52	□□□□□ -1.69
SDS3	YIL084C	SKP2	P42843	763 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	YFL015C	P43578	164 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	IMA1	P53051	589 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	COG2	P53271	262 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	AAT1	Q01802	451 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	PRP42	Q03776	544 aa	Known RBP	4.52	□□□□□ -1.69
SDS3	YIL084C	THI3	Q07471	609 aa		4.52	□□□□□ -1.69
SDS3	YIL084C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
SDS3	YIL084C	AHA1	Q12449	350 aa	Known RBP	4.52	□□□□□ -1.69
SDS3	YIL084C	DUR1,2	P32528	1835 aa	Known RBP	4.51	□□□□□ -1.69
SDS3	YIL084C	CHO2	P05374	869 aa	Known RBP	4.51	□□□□□ -1.69
SDS3	YIL084C	PET122	P10355	254 aa		4.51	□□□□□ -1.69
SDS3	YIL084C	RPC34	P32910	317 aa		4.51	□□□□□ -1.69
SDS3	YIL084C	YGR021W	P53212	290 aa		4.51	□□□□□ -1.69
SDS3	YIL084C	MRPL13	Q02204	264 aa		4.51	□□□□□ -1.69
SDS3	YIL084C	IRC4	Q03036	179 aa		4.51	□□□□□ -1.69
SDS3	YIL084C	NUC1	P08466	329 aa		4.5	□□□□□ -1.69
SDS3	YIL084C	BIK1	P11709	440 aa		4.5	□□□□□ -1.69
SDS3	YIL084C	KGD2	P19262	463 aa	Predicted RBP	4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms