RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 MYOZ2Q9NPC6 264 aa21.24■□□□□ 0.99
CLN3-263ENST00000637871 RBM28Q9NW13 759 aaKnown RBP21.24■□□□□ 0.99
CLN3-263ENST00000637871 DEXIO95424 95 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 BAG3O95817 575 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 U2AF2P26368 475 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLN3-263ENST00000637871 EPHX2P34913 555 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 CRKP46108 304 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 ME1P48163 572 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 RBM5P52756 815 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLN3-263ENST00000637871 SEC23AQ15436 765 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 CFAP100Q494V2 611 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 KRT40Q6A162 431 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 FANCBQ8NB91 859 aa21.23■□□□□ 0.99
CLN3-263ENST00000637871 ASTN2O75129 1339 aaPredicted RBP21.23■□□□□ 0.99
CLN3-263ENST00000637871 H7C1D1 291 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 KINO60870 393 aaKnown RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 POTEIP0CG38 1075 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 POTEJP0CG39 1038 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 HIRAP54198 1017 aaPredicted RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 PPP4CP60510 307 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 TYRO3Q06418 890 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 KIF4BQ2VIQ3 1234 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 ANO1Q5XXA6 986 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 CTR9Q6PD62 1173 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 ZNF654Q8IZM8 581 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 MRPS27Q92552 414 aaKnown RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 ZSCAN10Q96SZ4 725 aaPredicted RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 NOL10Q9BSC4 688 aaKnown RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 TAF1DQ9H5J8 278 aaPredicted RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 HDAC9Q9UKV0 1011 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 SUGT1Q9Y2Z0 365 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 TACC3Q9Y6A5 838 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 SPTLC2O15270 562 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 PPP6R2O75170 966 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 NR1I2O75469 434 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 XBP1P17861 261 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 FOSBP53539 338 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 DYNLL1P63167 89 aaKnown RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 PDE4BQ07343 736 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 GNL2Q13823 731 aaKnown RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 EAPPQ56P03 285 aaPredicted RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 SLF2Q8IX21 1173 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 AMOTL1Q8IY63 956 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 GPBP1L1Q9HC44 474 aaPredicted RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 DCP1AQ9NPI6 582 aaPredicted RBP21.22■□□□□ 0.99
CLN3-263ENST00000637871 DAGLAQ9Y4D2 1042 aa21.22■□□□□ 0.99
CLN3-263ENST00000637871 DDAH1O94760 285 aa21.21■□□□□ 0.99
CLN3-263ENST00000637871 NBPF9Q3BBW0 867 aa21.21■□□□□ 0.99
CLN3-263ENST00000637871 CATIPQ7Z7H3 387 aa21.21■□□□□ 0.99
CLN3-263ENST00000637871 ZNF784Q8NCA9 323 aaPredicted RBP21.21■□□□□ 0.99
CLN3-263ENST00000637871 TEKT1Q969V4 418 aa21.21■□□□□ 0.99
CLN3-263ENST00000637871 RNF26Q9BY78 433 aaPredicted RBP21.21■□□□□ 0.99
CLN3-263ENST00000637871 ADARB2Q9NS39 739 aaKnown RBP21.21■□□□□ 0.99
CLN3-263ENST00000637871 NOL7Q9UMY1 257 aaKnown RBP21.21■□□□□ 0.99
CLN3-263ENST00000637871 SCAF8Q9UPN6 1271 aaKnown RBP21.21■□□□□ 0.99
CLN3-263ENST00000637871 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.21■□□□□ 0.99
CLN3-263ENST00000637871 TNKSO95271 1327 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 IQCA1LA6NCM1 817 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 USP17L12C9JPN9 530 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 USP17L21D6R901 530 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 MSNP26038 577 aaKnown RBP21.2■□□□□ 0.98
CLN3-263ENST00000637871 CEBPZQ03701 1054 aaKnown RBP21.2■□□□□ 0.98
CLN3-263ENST00000637871 SLC39A14Q15043 492 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 CRACR2BQ8N4Y2 399 aaPredicted RBP21.2■□□□□ 0.98
CLN3-263ENST00000637871 ENGASEQ8NFI3 743 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 PRMT6Q96LA8 375 aaPredicted RBP21.2■□□□□ 0.98
CLN3-263ENST00000637871 SLC26A6Q9BXS9 759 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 SENP2Q9HC62 589 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 RRAGDQ9NQL2 400 aaPredicted RBP21.2■□□□□ 0.98
CLN3-263ENST00000637871 INCENPQ9NQS7 918 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 SERPINA10Q9UK55 444 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 PCDHA7Q9UN72 937 aa21.2■□□□□ 0.98
CLN3-263ENST00000637871 MROH7-TTC4A0A0A0MT08 1334 aa21.19■□□□□ 0.98
CLN3-263ENST00000637871 TPM3P06753 285 aa21.19■□□□□ 0.98
CLN3-263ENST00000637871 VEGFAP15692 232 aaPredicted RBP21.19■□□□□ 0.98
CLN3-263ENST00000637871 AKAP17AQ02040 695 aaKnown RBP21.19■□□□□ 0.98
CLN3-263ENST00000637871 TPRNQ4KMQ1 711 aa21.19■□□□□ 0.98
CLN3-263ENST00000637871 IFIT1BQ5T764 474 aaKnown RBP21.19■□□□□ 0.98
CLN3-263ENST00000637871 NKX2-3Q8TAU0 364 aa21.19■□□□□ 0.98
CLN3-263ENST00000637871 FOXP1Q9H334 677 aaPredicted RBP21.19■□□□□ 0.98
CLN3-263ENST00000637871 WNT10BO00744 389 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 RANBP6O60518 1105 aaKnown RBP21.18■□□□□ 0.98
CLN3-263ENST00000637871 POLR3DP05423 398 aaPredicted RBP21.18■□□□□ 0.98
CLN3-263ENST00000637871 PLCG2P16885 1265 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 CMA1P23946 247 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 DLGAP5Q15398 846 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 RAB11FIP4Q86YS3 637 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 FSIP1Q8NA03 581 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 AATFQ9NY61 560 aaKnown RBP eCLIP21.18■□□□□ 0.98
CLN3-263ENST00000637871 GAKO14976 1311 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 CLRN2A0PK11 232 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 SPDYE2BA6NHP3 402 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 SPDYE6P0CI01 402 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 CAMK4Q16566 473 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 OTUD7BQ6GQQ9 843 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 APOBEC3HQ6NTF7 200 aaKnown RBP21.18■□□□□ 0.98
CLN3-263ENST00000637871 PHKBQ93100 1093 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 ZNF287Q9HBT7 754 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.18■□□□□ 0.98
CLN3-263ENST00000637871 MRVI1Q9Y6F6 885 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms