RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SERPINB13Q9UIV8 391 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 CDK5RAP2Q96SN8 1893 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 MBD4O95243 580 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 HMGCRP04035 888 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 SLFNL1Q499Z3 407 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 LCORLQ8N3X6 602 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 SDR42E1Q8WUS8 393 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 SYMPKQ92797 1274 aaKnown RBP14.01□□□□□ -0.17
CLN3-257ENST00000637110 DDRGK1Q96HY6 314 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 GUCD1Q96NT3 240 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 HMX1Q9NP08 348 aaPredicted RBP14.01□□□□□ -0.17
CLN3-257ENST00000637110 TMOD4Q9NZQ9 345 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 MYH1P12882 1939 aa14.01□□□□□ -0.17
CLN3-257ENST00000637110 FOCADQ5VW36 1801 aa14□□□□□ -0.17
CLN3-257ENST00000637110 TCRBV5S4A2TA0A5A2 114 aa14□□□□□ -0.17
CLN3-257ENST00000637110 POTEB2H3BUK9 544 aa14□□□□□ -0.17
CLN3-257ENST00000637110 HMGCS2P54868 508 aa14□□□□□ -0.17
CLN3-257ENST00000637110 ZNF697Q5TEC3 545 aa14□□□□□ -0.17
CLN3-257ENST00000637110 ANKRD45Q5TZF3 282 aa14□□□□□ -0.17
CLN3-257ENST00000637110 AMOTL1Q8IY63 956 aa14□□□□□ -0.17
CLN3-257ENST00000637110 DNAJC18Q9H819 358 aa14□□□□□ -0.17
CLN3-257ENST00000637110 PNMA3Q9UL41 463 aa14□□□□□ -0.17
CLN3-257ENST00000637110 ERC2O15083 957 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 GH2P01242 217 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 PABPC4Q13310 644 aaKnown RBP eCLIP13.99□□□□□ -0.17
CLN3-257ENST00000637110 MTMR2Q13614 643 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 UBE3CQ15386 1083 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 CERKLQ49MI3 558 aaPredicted RBP13.99□□□□□ -0.17
CLN3-257ENST00000637110 EHD4Q9H223 541 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 CABP5Q9NP86 173 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 GINM1Q9NU53 330 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 ZBTB21Q9ULJ3 1066 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 AGTPBP1Q9UPW5 1226 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 ATAD5Q96QE3 1844 aa13.99□□□□□ -0.17
CLN3-257ENST00000637110 SPTBN5Q9NRC6 3674 aaKnown RBP13.99□□□□□ -0.17
CLN3-257ENST00000637110 MPHOSPH10O00566 681 aaKnown RBP13.98□□□□□ -0.17
CLN3-257ENST00000637110 PRKAB2O43741 272 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 CHGBP05060 677 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 PLCD1P51178 756 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 RAB3GAP1Q15042 981 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 ABCB5Q2M3G0 1257 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 SHROOM1Q2M3G4 852 aaPredicted RBP13.98□□□□□ -0.17
CLN3-257ENST00000637110 TREML2Q5T2D2 321 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 METTL16Q86W50 562 aaKnown RBP13.98□□□□□ -0.17
CLN3-257ENST00000637110 PROCA1Q8NCQ7 364 aaPredicted RBP13.98□□□□□ -0.17
CLN3-257ENST00000637110 FAM161BQ96MY7 647 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 FEZ1Q99689 392 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 WDR18Q9BV38 432 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 OGDHLQ9ULD0 1010 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 SLC4A4Q9Y6R1 1079 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 PTPRFP10586 1907 aa13.98□□□□□ -0.17
CLN3-257ENST00000637110 SIPA1L1O43166 1804 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 TTC41PQ6P2S7 1318 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 TTC28Q96AY4 2481 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 C19orf81C9J6K1 198 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 USP17L10C9JJH3 530 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 CYP2D6P10635 497 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 BACE1P56817 501 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 JAG1P78504 1218 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 ZYXQ15942 572 aaKnown RBP13.97□□□□□ -0.17
CLN3-257ENST00000637110 FAM110CQ1W6H9 321 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 LRRFIP1Q32MZ4 808 aaKnown RBP13.97□□□□□ -0.17
CLN3-257ENST00000637110 TATDN1Q6P1N9 297 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 ANKRD13CQ8N6S4 541 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 KBTBD3Q8NAB2 608 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 MAFAQ8NHW3 353 aaPredicted RBP13.97□□□□□ -0.17
CLN3-257ENST00000637110 DCP1AQ9NPI6 582 aaPredicted RBP13.97□□□□□ -0.17
CLN3-257ENST00000637110 ATP8A2Q9NTI2 1148 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 SUPT16HQ9Y5B9 1047 aaKnown RBP13.97□□□□□ -0.17
CLN3-257ENST00000637110 PHIPQ8WWQ0 1821 aa13.97□□□□□ -0.17
CLN3-257ENST00000637110 GLRX3O76003 335 aaKnown RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 MX1P20591 662 aa13.96□□□□□ -0.17
CLN3-257ENST00000637110 COL9A1P20849 921 aa13.96□□□□□ -0.17
CLN3-257ENST00000637110 IRX3P78415 501 aaPredicted RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 MDM2Q00987 491 aaPredicted RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 HDAC1Q13547 482 aaPredicted RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 AAMPQ13685 434 aa13.96□□□□□ -0.17
CLN3-257ENST00000637110 OTUD7AQ8TE49 926 aaPredicted RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 LBHD1Q9BQE6 289 aaPredicted RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 FSD1Q9BTV5 496 aa13.96□□□□□ -0.17
CLN3-257ENST00000637110 PUS7LQ9H0K6 701 aaKnown RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 RWDD1Q9H446 243 aaPredicted RBP13.96□□□□□ -0.17
CLN3-257ENST00000637110 NAV1Q8NEY1 1877 aa13.95□□□□□ -0.18
CLN3-257ENST00000637110 EYSQ5T1H1 3165 aa13.95□□□□□ -0.18
CLN3-257ENST00000637110 RNF113AO15541 343 aaKnown RBP13.95□□□□□ -0.18
CLN3-257ENST00000637110 ZFYP08048 801 aaPredicted RBP13.95□□□□□ -0.18
CLN3-257ENST00000637110 SH3D19Q5HYK7 790 aa13.95□□□□□ -0.18
CLN3-257ENST00000637110 B4GALNT3Q6L9W6 998 aa13.95□□□□□ -0.18
CLN3-257ENST00000637110 USP17L2Q6R6M4 530 aa13.95□□□□□ -0.18
CLN3-257ENST00000637110 EXOC6Q8TAG9 804 aa13.95□□□□□ -0.18
CLN3-257ENST00000637110 LAMA2P24043 3122 aaKnown RBP13.95□□□□□ -0.18
CLN3-257ENST00000637110 PFASO15067 1338 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 MYH7P12883 1935 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 CYP2D7A0A087X1C5 515 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 USP17L12C9JPN9 530 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 USP17L21D6R901 530 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 APPP05067 770 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 SHMT1P34896 483 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 GCLCP48506 637 aaPredicted RBP13.94□□□□□ -0.18
CLN3-257ENST00000637110 EVX2Q03828 476 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms