RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GPRC5DQ9NZD1 345 aa23.48■■□□□ 1.35
CLN3-250ENST00000636839 DICER1Q9UPY3 1922 aaKnown RBP23.48■■□□□ 1.35
CLN3-250ENST00000636839 DHX16O60231 1041 aaKnown RBP23.47■■□□□ 1.35
CLN3-250ENST00000636839 KIF4BQ2VIQ3 1234 aa23.47■■□□□ 1.35
CLN3-250ENST00000636839 CDC37L1Q7L3B6 337 aa23.47■■□□□ 1.35
CLN3-250ENST00000636839 AIFM3Q96NN9 605 aa23.47■■□□□ 1.35
CLN3-250ENST00000636839 MPHOSPH10O00566 681 aaKnown RBP23.47■■□□□ 1.35
CLN3-250ENST00000636839 JAG1P78504 1218 aa23.47■■□□□ 1.35
CLN3-250ENST00000636839 FOXP4Q8IVH2 680 aaPredicted RBP23.47■■□□□ 1.35
CLN3-250ENST00000636839 FAM184AQ8NB25 1140 aa23.47■■□□□ 1.35
CLN3-250ENST00000636839 ANKS1AQ92625 1134 aa23.47■■□□□ 1.35
CLN3-250ENST00000636839 ORC3Q9UBD5 711 aaPredicted RBP23.47■■□□□ 1.35
CLN3-250ENST00000636839 ZSCAN22P10073 491 aaPredicted RBP23.46■■□□□ 1.35
CLN3-250ENST00000636839 KAT14Q9H8E8 782 aa23.46■■□□□ 1.35
CLN3-250ENST00000636839 PGAP2Q9UHJ9 254 aa23.46■■□□□ 1.35
CLN3-250ENST00000636839 PLEKHA8P1O95397 391 aa23.45■■□□□ 1.35
CLN3-250ENST00000636839 OTUD7BQ6GQQ9 843 aa23.45■■□□□ 1.35
CLN3-250ENST00000636839 MIGA2Q7L4E1 593 aa23.45■■□□□ 1.35
CLN3-250ENST00000636839 METTL16Q86W50 562 aaKnown RBP23.45■■□□□ 1.35
CLN3-250ENST00000636839 PNMA1Q8ND90 353 aa23.45■■□□□ 1.35
CLN3-250ENST00000636839 HACL1Q9UJ83 578 aa23.45■■□□□ 1.35
CLN3-250ENST00000636839 WDR33Q9C0J8 1336 aaKnown RBP23.45■■□□□ 1.35
CLN3-250ENST00000636839 IGKV6D-41A0A0C4DH26 115 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 H7C1D1 291 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 GDF11O95390 407 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 HIRAP54198 1017 aaPredicted RBP23.45■■□□□ 1.34
CLN3-250ENST00000636839 HMGN5P82970 282 aaKnown RBP23.45■■□□□ 1.34
CLN3-250ENST00000636839 GUCY1B3Q02153 619 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 RASA3Q14644 834 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 FKBP1CQ5VVH2 108 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 TATDN1Q6P1N9 297 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 FERMT3Q86UX7 667 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 TRIM34Q9BYJ4 488 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 MTMR4Q9NYA4 1195 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 NID2Q14112 1375 aa23.45■■□□□ 1.34
CLN3-250ENST00000636839 CERKLQ49MI3 558 aaPredicted RBP23.44■■□□□ 1.34
CLN3-250ENST00000636839 BAG4O95429 457 aaKnown RBP23.43■■□□□ 1.34
CLN3-250ENST00000636839 GUCY1A2P33402 732 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 NBPF11Q86T75 865 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 FAM83AQ86UY5 434 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 SLC26A6Q9BXS9 759 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 hCG_1642624A0A1W2PR95 340 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 DDAH1O94760 285 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 NT5C2P49902 561 aa23.43■■□□□ 1.34
CLN3-250ENST00000636839 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.43■■□□□ 1.34
CLN3-250ENST00000636839 PDCP20941 246 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 NOVP48745 357 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 STAG2Q8N3U4 1231 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 PLIN4Q96Q06 1357 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 F13A1P00488 732 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 IFNAR1P17181 557 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 MCM4P33991 863 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 MMP14P50281 582 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 RCAN1P53805 252 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 FUT2Q10981 343 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 LRRC47Q8N1G4 583 aaKnown RBP23.42■■□□□ 1.34
CLN3-250ENST00000636839 TEPSINQ96N21 525 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 CLIP2Q9UDT6 1046 aa23.42■■□□□ 1.34
CLN3-250ENST00000636839 COL2A1P02458 1487 aaPredicted RBP23.41■■□□□ 1.34
CLN3-250ENST00000636839 CCDC178Q5BJE1 867 aa23.41■■□□□ 1.34
CLN3-250ENST00000636839 ANGEL2Q5VTE6 544 aaKnown RBP23.41■■□□□ 1.34
CLN3-250ENST00000636839 PRAMEF18Q5VWM3 479 aa23.41■■□□□ 1.34
CLN3-250ENST00000636839 FAM173BQ6P4H8 233 aa23.41■■□□□ 1.34
CLN3-250ENST00000636839 SRBD1Q8N5C6 995 aaKnown RBP23.41■■□□□ 1.34
CLN3-250ENST00000636839 MYH8P13535 1937 aa23.41■■□□□ 1.34
CLN3-250ENST00000636839 GOLGA8HP0CJ92 632 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 ATP2B2Q01814 1243 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 SEPT2Q15019 361 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 CPLX2Q6PUV4 134 aaKnown RBP23.4■■□□□ 1.34
CLN3-250ENST00000636839 H3BQV1 296 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 CDKL5O76039 1030 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 FMNL1O95466 1100 aaPredicted RBP23.4■■□□□ 1.34
CLN3-250ENST00000636839 CALM1P0DP23 149 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 CALM2P0DP24 149 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 CALM3P0DP25 149 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 SSRP1Q08945 709 aaKnown RBP23.4■■□□□ 1.34
CLN3-250ENST00000636839 IFFO2Q5TF58 517 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 CCDC17Q96LX7 622 aa23.4■■□□□ 1.34
CLN3-250ENST00000636839 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.4■■□□□ 1.34
CLN3-250ENST00000636839 CCDC196A0A1B0GTZ2 297 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 SOCS7O14512 581 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 TOP1P11387 765 aaKnown RBP23.39■■□□□ 1.34
CLN3-250ENST00000636839 TMTC3Q6ZXV5 915 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 SIAH1Q8IUQ4 282 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 CTCFLQ8NI51 663 aaPredicted RBP23.39■■□□□ 1.34
CLN3-250ENST00000636839 PIBF1Q8WXW3 757 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 DEFB129Q9H1M3 183 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 CPVLQ9H3G5 476 aa23.39■■□□□ 1.34
CLN3-250ENST00000636839 GH2P01242 217 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 ABCB5Q2M3G0 1257 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 SLC35G1Q2M3R5 365 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 USP17L2Q6R6M4 530 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 CLEC17AQ6ZS10 378 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 ALG1Q9BT22 464 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 MAD2L2Q9UI95 211 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 USP17L5A8MUK1 530 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 TTLL1O95922 423 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 MCTP1Q6DN14 999 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 DLK2Q6UY11 383 aa23.38■■□□□ 1.33
CLN3-250ENST00000636839 HERC5Q9UII4 1024 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms