RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MNX1P50219 401 aaPredicted RBP19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L24Q0WX57 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 PDE3AQ14432 1141 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 SLFNL1Q499Z3 407 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 HSP90AB4PQ58FF6 505 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 PLEKHH3Q7Z736 793 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 C7orf61Q8IZ16 206 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 CLASRPQ8N2M8 674 aaKnown RBP19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP6NLQ92738 828 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 C12orf42Q96LP6 360 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 CABP5Q9NP86 173 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 DOCK3Q8IZD9 2030 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 CEP290O15078 2479 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 ZNF532Q9HCE3 1301 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 IFIT2P09913 472 aaKnown RBP19.6■□□□□ 0.73
CLN3-246ENST00000636228 CYP2D6P10635 497 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 ZKSCAN1P17029 563 aaPredicted RBP19.6■□□□□ 0.73
CLN3-246ENST00000636228 CAPN2P17655 700 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 CACNB2Q08289 660 aaPredicted RBP19.6■□□□□ 0.73
CLN3-246ENST00000636228 SEPT2Q15019 361 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 MORN1Q5T089 497 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 MAP3K21Q5TCX8 1036 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 CATSPERGQ6ZRH7 1159 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 SDR42E1Q8WUS8 393 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 SOCS4Q8WXH5 440 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 CWC22Q9HCG8 908 aaKnown RBP19.6■□□□□ 0.73
CLN3-246ENST00000636228 MCM9Q9NXL9 1143 aa19.6■□□□□ 0.73
CLN3-246ENST00000636228 CDK5RAP2Q96SN8 1893 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 XRCC5P13010 732 aaKnown RBP19.59■□□□□ 0.73
CLN3-246ENST00000636228 VCAM1P19320 739 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 CCND3P30281 292 aaPredicted RBP19.59■□□□□ 0.73
CLN3-246ENST00000636228 TTF1Q15361 905 aaPredicted RBP19.59■□□□□ 0.73
CLN3-246ENST00000636228 WDR78Q5VTH9 848 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 LCORLQ8N3X6 602 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 ANKLE1Q8NAG6 615 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 GTF3C2Q8WUA4 911 aaPredicted RBP19.59■□□□□ 0.73
CLN3-246ENST00000636228 KIF1BPQ96EK5 621 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 NBPF3Q9H094 633 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 KIAA1683Q9H0B3 1180 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 C11orf49Q9H6J7 331 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 OGDHLQ9ULD0 1010 aa19.59■□□□□ 0.73
CLN3-246ENST00000636228 ZMYND8Q9ULU4 1186 aaPredicted RBP19.59■□□□□ 0.73
CLN3-246ENST00000636228 TCRBV5S4A2TA0A5A2 114 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 MPHOSPH10O00566 681 aaKnown RBP19.58■□□□□ 0.72
CLN3-246ENST00000636228 RGS2P41220 211 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 GABPAQ06546 454 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 RPAP2Q8IXW5 612 aaPredicted RBP19.58■□□□□ 0.72
CLN3-246ENST00000636228 CRNKL1Q9BZJ0 848 aaKnown RBP19.58■□□□□ 0.72
CLN3-246ENST00000636228 BOLA2Q9H3K6 86 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 RPAP3Q9H6T3 665 aaPredicted RBP19.58■□□□□ 0.72
CLN3-246ENST00000636228 ZBTB40Q9NUA8 1239 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 BTBD7Q9P203 1132 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 RABGAP1Q9Y3P9 1069 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 FOCADQ5VW36 1801 aa19.58■□□□□ 0.72
CLN3-246ENST00000636228 TRIOBPQ9H2D6 2365 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 A0A1W2PRG0 241 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 PRKAB2O43741 272 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 CHGBP05060 677 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 SYN1P17600 705 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 USP14P54578 494 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 SLC44A5Q8NCS7 719 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 ARMT1Q9H993 441 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 FLRT1Q9NZU1 646 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 PLXNB2O15031 1838 aa19.57■□□□□ 0.72
CLN3-246ENST00000636228 SMIM22K7EJ46 135 aa19.56■□□□□ 0.72
CLN3-246ENST00000636228 SOX1O00570 391 aaPredicted RBP19.56■□□□□ 0.72
CLN3-246ENST00000636228 MS4A1P11836 297 aa19.56■□□□□ 0.72
CLN3-246ENST00000636228 MAP2K5Q13163 448 aa19.56■□□□□ 0.72
CLN3-246ENST00000636228 TMED8Q6PL24 325 aaPredicted RBP19.56■□□□□ 0.72
CLN3-246ENST00000636228 DYNLL2Q96FJ2 89 aa19.56■□□□□ 0.72
CLN3-246ENST00000636228 DCP1AQ9NPI6 582 aaPredicted RBP19.56■□□□□ 0.72
CLN3-246ENST00000636228 SZT2Q5T011 3432 aa19.56■□□□□ 0.72
CLN3-246ENST00000636228 SPDYE16A6NNV3 312 aaPredicted RBP19.55■□□□□ 0.72
CLN3-246ENST00000636228 HMMRO75330 724 aa19.55■□□□□ 0.72
CLN3-246ENST00000636228 RANBP2P49792 3224 aaKnown RBP19.55■□□□□ 0.72
CLN3-246ENST00000636228 LHX8Q68G74 356 aa19.55■□□□□ 0.72
CLN3-246ENST00000636228 TRMT44Q8IYL2 757 aaKnown RBP19.55■□□□□ 0.72
CLN3-246ENST00000636228 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.55■□□□□ 0.72
CLN3-246ENST00000636228 APBA2Q99767 749 aa19.55■□□□□ 0.72
CLN3-246ENST00000636228 DDX19BQ9UMR2 479 aa19.55■□□□□ 0.72
CLN3-246ENST00000636228 PFASO15067 1338 aa19.54■□□□□ 0.72
CLN3-246ENST00000636228 CCNA1P78396 465 aa19.54■□□□□ 0.72
CLN3-246ENST00000636228 KIAA1755Q5JYT7 1200 aa19.54■□□□□ 0.72
CLN3-246ENST00000636228 CLEC10AQ8IUN9 316 aa19.54■□□□□ 0.72
CLN3-246ENST00000636228 LRCH3Q96II8 777 aa19.54■□□□□ 0.72
CLN3-246ENST00000636228 PAG1Q9NWQ8 432 aa19.54■□□□□ 0.72
CLN3-246ENST00000636228 MYH1P12882 1939 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 CYP2D7A0A087X1C5 515 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 RAB11FIP3O75154 756 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 MBD4O95243 580 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 PTPREP23469 700 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 ADD2P35612 726 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 NPLOC4Q8TAT6 608 aa19.53■□□□□ 0.72
CLN3-246ENST00000636228 SLC15A5A6NIM6 579 aa19.52■□□□□ 0.72
CLN3-246ENST00000636228 SMARCA5O60264 1052 aaPredicted RBP19.52■□□□□ 0.72
CLN3-246ENST00000636228 GLRX3O76003 335 aaKnown RBP19.52■□□□□ 0.72
CLN3-246ENST00000636228 C20orf194Q5TEA3 1177 aa19.52■□□□□ 0.72
CLN3-246ENST00000636228 LBX2Q6XYB7 198 aa19.52■□□□□ 0.72
CLN3-246ENST00000636228 GDF15Q99988 308 aa19.52■□□□□ 0.72
CLN3-246ENST00000636228 TANGO6Q9C0B7 1094 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms