RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 USP17L24Q0WX57 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 CERKLQ49MI3 558 aaPredicted RBP28.93■■■□□ 2.22
CPSF1-214ENST00000622776 MORN1Q5T089 497 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 C11orf49Q9H6J7 331 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 RABGAP1Q9Y3P9 1069 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 LAMA3Q16787 3333 aa28.92■■■□□ 2.22
CPSF1-214ENST00000622776 RGS2P41220 211 aa28.92■■■□□ 2.22
CPSF1-214ENST00000622776 RAB3GAP1Q15042 981 aa28.92■■■□□ 2.22
CPSF1-214ENST00000622776 USP14P54578 494 aa28.91■■■□□ 2.22
CPSF1-214ENST00000622776 CACNB2Q08289 660 aaPredicted RBP28.91■■■□□ 2.22
CPSF1-214ENST00000622776 ABCB5Q2M3G0 1257 aa28.91■■■□□ 2.22
CPSF1-214ENST00000622776 RIOK1Q9BRS2 568 aaKnown RBP28.91■■■□□ 2.22
CPSF1-214ENST00000622776 KIAA1683Q9H0B3 1180 aa28.91■■■□□ 2.22
CPSF1-214ENST00000622776 ZMYND8Q9ULU4 1186 aaPredicted RBP28.91■■■□□ 2.22
CPSF1-214ENST00000622776 CNMDO75829 334 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 CCL14Q16627 93 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 CATSPERGQ6ZRH7 1159 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 ACER1Q8TDN7 264 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 PANK1Q8TE04 598 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 APBA2Q99767 749 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 GDF15Q99988 308 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 CWC22Q9HCG8 908 aaKnown RBP28.9■■■□□ 2.22
CPSF1-214ENST00000622776 IL1RAPL2Q9NP60 686 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 CABP5Q9NP86 173 aa28.9■■■□□ 2.22
CPSF1-214ENST00000622776 DDX60LQ5H9U9 1706 aaKnown RBP28.89■■■□□ 2.22
CPSF1-214ENST00000622776 SHMT1P34896 483 aa28.89■■■□□ 2.22
CPSF1-214ENST00000622776 PLCD1P51178 756 aa28.89■■■□□ 2.22
CPSF1-214ENST00000622776 CCNA1P78396 465 aa28.89■■■□□ 2.22
CPSF1-214ENST00000622776 HSP90AB4PQ58FF6 505 aa28.89■■■□□ 2.22
CPSF1-214ENST00000622776 MAGEB6P1A0A0J9YX57 407 aa28.88■■■□□ 2.21
CPSF1-214ENST00000622776 SOX1O00570 391 aaPredicted RBP28.88■■■□□ 2.21
CPSF1-214ENST00000622776 VCAM1P19320 739 aa28.88■■■□□ 2.21
CPSF1-214ENST00000622776 TTF1Q15361 905 aaPredicted RBP28.88■■■□□ 2.21
CPSF1-214ENST00000622776 RHPN1Q8TCX5 695 aa28.88■■■□□ 2.21
CPSF1-214ENST00000622776 GLRX3O76003 335 aaKnown RBP28.87■■■□□ 2.21
CPSF1-214ENST00000622776 POLR3DP05423 398 aaPredicted RBP28.87■■■□□ 2.21
CPSF1-214ENST00000622776 CCND3P30281 292 aaPredicted RBP28.87■■■□□ 2.21
CPSF1-214ENST00000622776 BMP8BP34820 402 aa28.87■■■□□ 2.21
CPSF1-214ENST00000622776 MAP2K5Q13163 448 aa28.87■■■□□ 2.21
CPSF1-214ENST00000622776 LHX8Q68G74 356 aa28.86■■■□□ 2.21
CPSF1-214ENST00000622776 LBX2Q6XYB7 198 aa28.86■■■□□ 2.21
CPSF1-214ENST00000622776 MIER1Q8N108 512 aa28.86■■■□□ 2.21
CPSF1-214ENST00000622776 EDC3Q96F86 508 aaKnown RBP28.86■■■□□ 2.21
CPSF1-214ENST00000622776 PFASO15067 1338 aa28.86■■■□□ 2.21
CPSF1-214ENST00000622776 PDE6AP16499 860 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 SYN1P17600 705 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 GUCY1A2P33402 732 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 GABPAQ06546 454 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 SLC9C2Q5TAH2 1124 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 WDR78Q5VTH9 848 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 LRCH3Q96II8 777 aa28.85■■■□□ 2.21
CPSF1-214ENST00000622776 CRNKL1Q9BZJ0 848 aaKnown RBP28.85■■■□□ 2.21
CPSF1-214ENST00000622776 COL6A1P12109 1028 aa28.84■■■□□ 2.21
CPSF1-214ENST00000622776 RPAP3Q9H6T3 665 aaPredicted RBP28.84■■■□□ 2.21
CPSF1-214ENST00000622776 BTBD7Q9P203 1132 aa28.84■■■□□ 2.21
CPSF1-214ENST00000622776 SLC15A5A6NIM6 579 aa28.83■■■□□ 2.21
CPSF1-214ENST00000622776 PTPREP23469 700 aa28.83■■■□□ 2.21
CPSF1-214ENST00000622776 SEPT2Q15019 361 aa28.83■■■□□ 2.21
CPSF1-214ENST00000622776 CLASRPQ8N2M8 674 aaKnown RBP28.83■■■□□ 2.21
CPSF1-214ENST00000622776 MCM9Q9NXL9 1143 aa28.83■■■□□ 2.21
CPSF1-214ENST00000622776 SPDYE16A6NNV3 312 aaPredicted RBP28.82■■■□□ 2.2
CPSF1-214ENST00000622776 MFSD14CQ5VZR4 134 aa28.82■■■□□ 2.2
CPSF1-214ENST00000622776 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.82■■■□□ 2.2
CPSF1-214ENST00000622776 KIF1BPQ96EK5 621 aa28.82■■■□□ 2.2
CPSF1-214ENST00000622776 ZNF532Q9HCE3 1301 aa28.82■■■□□ 2.2
CPSF1-214ENST00000622776 APBB1O00213 710 aa28.81■■■□□ 2.2
CPSF1-214ENST00000622776 MAGEA10P43363 369 aaPredicted RBP28.81■■■□□ 2.2
CPSF1-214ENST00000622776 EVX2Q03828 476 aa28.81■■■□□ 2.2
CPSF1-214ENST00000622776 DNAJC2Q99543 621 aaKnown RBP28.81■■■□□ 2.2
CPSF1-214ENST00000622776 FLRT1Q9NZU1 646 aa28.81■■■□□ 2.2
CPSF1-214ENST00000622776 IVNS1ABPQ9Y6Y0 642 aa28.81■■■□□ 2.2
CPSF1-214ENST00000622776 GOLIM4O00461 696 aa28.8■■■□□ 2.2
CPSF1-214ENST00000622776 NAV1Q8NEY1 1877 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 ZBED9Q6R2W3 1325 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 A0A1W2PRG0 241 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 TCRBV5S4A2TA0A5A2 114 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 MPHOSPH10O00566 681 aaKnown RBP28.79■■■□□ 2.2
CPSF1-214ENST00000622776 HOXC6P09630 235 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 MS4A1P11836 297 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 GRB14Q14449 540 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 RPAP2Q8IXW5 612 aaPredicted RBP28.79■■■□□ 2.2
CPSF1-214ENST00000622776 SDR42E1Q8WUS8 393 aa28.79■■■□□ 2.2
CPSF1-214ENST00000622776 DCP1AQ9NPI6 582 aaPredicted RBP28.79■■■□□ 2.2
CPSF1-214ENST00000622776 IFIT2P09913 472 aaKnown RBP28.78■■■□□ 2.2
CPSF1-214ENST00000622776 LCORLQ8N3X6 602 aa28.78■■■□□ 2.2
CPSF1-214ENST00000622776 HMMRO75330 724 aa28.77■■■□□ 2.2
CPSF1-214ENST00000622776 ATP2B2Q01814 1243 aa28.77■■■□□ 2.2
CPSF1-214ENST00000622776 LRRC26Q2I0M4 334 aa28.77■■■□□ 2.2
CPSF1-214ENST00000622776 HOXC10Q9NYD6 342 aa28.77■■■□□ 2.2
CPSF1-214ENST00000622776 CYP2D6P10635 497 aa28.76■■■□□ 2.19
CPSF1-214ENST00000622776 COG2Q14746 738 aa28.76■■■□□ 2.19
CPSF1-214ENST00000622776 SIRT2Q8IXJ6 389 aa28.76■■■□□ 2.19
CPSF1-214ENST00000622776 SLC44A5Q8NCS7 719 aa28.76■■■□□ 2.19
CPSF1-214ENST00000622776 NPLOC4Q8TAT6 608 aa28.76■■■□□ 2.19
CPSF1-214ENST00000622776 BCL11AQ9H165 835 aa28.76■■■□□ 2.19
CPSF1-214ENST00000622776 UBE2OQ9C0C9 1292 aaKnown RBP28.75■■■□□ 2.19
CPSF1-214ENST00000622776 ARMT1Q9H993 441 aa28.75■■■□□ 2.19
CPSF1-214ENST00000622776 SWAP70Q9UH65 585 aa28.75■■■□□ 2.19
CPSF1-214ENST00000622776 DDX20Q9UHI6 824 aaKnown RBP28.75■■■□□ 2.19
CPSF1-214ENST00000622776 CYP2C19P33261 490 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms