RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SPTY2D1Q68D10 685 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 RCSD1Q6JBY9 416 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 ZNF804AQ7Z570 1209 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 STAG2Q8N3U4 1231 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 WDR66Q8TBY9 1149 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 NAT10Q9H0A0 1025 aaKnown RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 CPVLQ9H3G5 476 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 ARPP21Q9UBL0 812 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 COL24A1Q17RW2 1714 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 CUTAO60888 179 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 ZNF174Q15697 407 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 RILPL1Q5EBL4 403 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 TMTC3Q6ZXV5 915 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 CERKQ8TCT0 537 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 FBXO2Q9UK22 296 aaPredicted RBP12.21□□□□□ -0.46
CUX1-221ENST00000622516 STX8Q9UNK0 236 aa12.21□□□□□ -0.46
CUX1-221ENST00000622516 ZNF827Q17R98 1081 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 C12orf60Q5U649 245 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 GPKOWQ92917 476 aaPredicted RBP eCLIP12.2□□□□□ -0.467e-6■□□□□ 10
CUX1-221ENST00000622516 MTA3Q9BTC8 594 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 CSRNP2Q9H175 543 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 GGA1Q9UJY5 639 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 PCDHA5Q9Y5H7 936 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 NID2Q14112 1375 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 PRPF3O43395 683 aaKnown RBP12.2□□□□□ -0.46
CUX1-221ENST00000622516 ORC4O43929 436 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 SMC2O95347 1197 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 ATP1A3P13637 1013 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 NLRP12P59046 1061 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 MFSD14BQ5SR56 506 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 KRT27Q7Z3Y8 459 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 TSC1Q92574 1164 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 EPSTI1Q96J88 318 aa12.2□□□□□ -0.46
CUX1-221ENST00000622516 MKRN1Q9UHC7 482 aaKnown RBP12.2□□□□□ -0.46
CUX1-221ENST00000622516 PRR29P0C7W0 189 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 GOLGA8HP0CJ92 632 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 CASP1P29466 404 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 KRT2P35908 639 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 BTDP43251 543 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 KRBA2Q6ZNG9 492 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 PHF20Q9BVI0 1012 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 MXD3Q9BW11 206 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 SERTAD1Q9UHV2 236 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 LY75O60449 1722 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 UQCRHLA0A096LP55 91 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 UQCRHP07919 91 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 TSPY3P0CV98 308 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 TSPY8P0CW00 308 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 XBP1P17861 261 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 PTPREP23469 700 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 CRY2Q49AN0 593 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 RASGRP4Q8TDF6 673 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 RBM17Q96I25 401 aaKnown RBP12.19□□□□□ -0.46
CUX1-221ENST00000622516 KAT14Q9H8E8 782 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 IFNKQ9P0W0 207 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 CNTNAP5Q8WYK1 1306 aa12.19□□□□□ -0.46
CUX1-221ENST00000622516 BAG3O95817 575 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 BMP6P22004 513 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 NPY5RQ15761 445 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 TXNRD1Q16881 649 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 PIK3AP1Q6ZUJ8 805 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 TBC1D16Q8TBP0 767 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 XPO4Q9C0E2 1151 aaKnown RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 PDS5AQ29RF7 1337 aaKnown RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 CCDC88AQ3V6T2 1871 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 POLRMTO00411 1230 aaKnown RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 NLRP5P59047 1200 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 RBM6P78332 1123 aaKnown RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 GTF2IP78347 998 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 NCAPHQ15003 741 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 SBK1Q52WX2 424 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 PNMA1Q8ND90 353 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 STAMQ92783 540 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 NOL10Q9BSC4 688 aaKnown RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 RTFDC1Q9BY42 306 aaPredicted RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 RBM28Q9NW13 759 aaKnown RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 DDAH1O94760 285 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 ADRA2BP18089 450 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 RCAN1P53805 252 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 SARM1Q6SZW1 724 aa12.18□□□□□ -0.46
CUX1-221ENST00000622516 ZNF444Q8N0Y2 327 aaPredicted RBP12.18□□□□□ -0.46
CUX1-221ENST00000622516 A0A087X0B3 334 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 TRIM75PA6NK02 468 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 CALM1P0DP23 149 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 CALM2P0DP24 149 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 CALM3P0DP25 149 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 AFMP43652 599 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 PICALMQ13492 652 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 MSL1Q68DK7 614 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 TEX11Q8IYF3 940 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 DHX58Q96C10 678 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 C16orf45Q96MC5 204 aaPredicted RBP12.17□□□□□ -0.46
CUX1-221ENST00000622516 SLURP2P0DP57 97 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 PCP11498 1178 aaKnown RBP12.17□□□□□ -0.46
CUX1-221ENST00000622516 DOK7Q18PE1 504 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.17□□□□□ -0.46
CUX1-221ENST00000622516 LRRC8AQ8IWT6 810 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 MRFAP1L1Q96HT8 127 aa12.17□□□□□ -0.46
CUX1-221ENST00000622516 TIGD1Q96MW7 591 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms