RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 SHMT1P34896 483 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 USP5P45974 858 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 ZYXQ15942 572 aaKnown RBP13.93□□□□□ -0.18
CPNE3-210ENST00000621245 ERC1Q8IUD2 1116 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 FOXP4Q8IVH2 680 aaPredicted RBP13.93□□□□□ -0.18
CPNE3-210ENST00000621245 TBC1D2Q9BYX2 928 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 AS3MTQ9HBK9 375 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 MORF4L1Q9UBU8 362 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 GJD2Q9UKL4 321 aa13.93□□□□□ -0.18
CPNE3-210ENST00000621245 GOLIM4O00461 696 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 HLA-DOAP06340 250 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 GUCY1A2P33402 732 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 HERVK_113P62684 666 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 UBXN2AP68543 259 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 TATDN1Q6P1N9 297 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 LCORLQ8N3X6 602 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 ACER1Q8TDN7 264 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 DIS3LQ8TF46 1054 aaKnown RBP13.92□□□□□ -0.18
CPNE3-210ENST00000621245 DEFB118Q96PH6 123 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 DNAJC2Q99543 621 aaKnown RBP13.92□□□□□ -0.18
CPNE3-210ENST00000621245 TRIM34Q9BYJ4 488 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 PORCNQ9H237 461 aa13.92□□□□□ -0.18
CPNE3-210ENST00000621245 PAK6Q9NQU5 681 aaPredicted RBP13.92□□□□□ -0.18
CPNE3-210ENST00000621245 ZNF532Q9HCE3 1301 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 USP17L10C9JJH3 530 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 CNMDO75829 334 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 HOXA7P31268 230 aaPredicted RBP13.91□□□□□ -0.18
CPNE3-210ENST00000621245 GCLCP48506 637 aaPredicted RBP13.91□□□□□ -0.18
CPNE3-210ENST00000621245 FXR1P51114 621 aaKnown RBP eCLIP13.91□□□□□ -0.18
CPNE3-210ENST00000621245 IRX3P78415 501 aaPredicted RBP13.91□□□□□ -0.18
CPNE3-210ENST00000621245 MAP3K12Q12852 859 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 Q3C1V9 767 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 SLC44A5Q8NCS7 719 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 PXYLP1Q8TE99 480 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 SDR42E1Q8WUS8 393 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 TRIB2Q92519 343 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 COA7Q96BR5 231 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 TMOD4Q9NZQ9 345 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 RBPJLQ9UBG7 517 aa13.91□□□□□ -0.18
CPNE3-210ENST00000621245 GREB1LQ9C091 1923 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-210ENST00000621245 MAGEB6P1A0A0J9YX57 407 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 PRKAB2O43741 272 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 SMARCA5O60264 1052 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-210ENST00000621245 FARP2O94887 1054 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-210ENST00000621245 SGPL1O95470 568 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 PABPC4Q13310 644 aaKnown RBP eCLIP13.9□□□□□ -0.18
CPNE3-210ENST00000621245 SLC9C2Q5TAH2 1124 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 CLEC10AQ8IUN9 316 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 KIF1BPQ96EK5 621 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 PAGR1Q9BTK6 254 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.9□□□□□ -0.18
CPNE3-210ENST00000621245 EHD4Q9H223 541 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 ARMT1Q9H993 441 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 SERPINB13Q9UIV8 391 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 RCAN3Q9UKA8 241 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 DDX19BQ9UMR2 479 aa13.9□□□□□ -0.18
CPNE3-210ENST00000621245 GABPAQ06546 454 aa13.89□□□□□ -0.19
CPNE3-210ENST00000621245 RAB3GAP1Q15042 981 aa13.89□□□□□ -0.19
CPNE3-210ENST00000621245 CHRDL2Q6WN34 429 aa13.89□□□□□ -0.19
CPNE3-210ENST00000621245 RPAP2Q8IXW5 612 aaPredicted RBP13.89□□□□□ -0.19
CPNE3-210ENST00000621245 GCC1Q96CN9 775 aa13.89□□□□□ -0.19
CPNE3-210ENST00000621245 CRISPLD2Q9H0B8 497 aa13.89□□□□□ -0.19
CPNE3-210ENST00000621245 BOLA2Q9H3K6 86 aa13.89□□□□□ -0.19
CPNE3-210ENST00000621245 ZNFX1Q9P2E3 1918 aaKnown RBP13.89□□□□□ -0.19
CPNE3-210ENST00000621245 CYP2D7A0A087X1C5 515 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 C19orf81C9J6K1 198 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 HMGCRP04035 888 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 IFIT2P09913 472 aaKnown RBP13.88□□□□□ -0.19
CPNE3-210ENST00000621245 VCAM1P19320 739 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 CYP2B6P20813 491 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 ERVK-9P63128 1117 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 ERVK-24P63145 666 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 SEPT2Q15019 361 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 CCL14Q16627 93 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 ABCB5Q2M3G0 1257 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 CERKLQ49MI3 558 aaPredicted RBP13.88□□□□□ -0.19
CPNE3-210ENST00000621245 HSP90AB4PQ58FF6 505 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 KIAA1755Q5JYT7 1200 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 USP17L2Q6R6M4 530 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 CLASRPQ8N2M8 674 aaKnown RBP13.88□□□□□ -0.19
CPNE3-210ENST00000621245 NKX2-3Q8TAU0 364 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.88□□□□□ -0.19
CPNE3-210ENST00000621245 DPF3Q92784 378 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 DYNLL2Q96FJ2 89 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 C12orf42Q96LP6 360 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 FEZ1Q99689 392 aa13.88□□□□□ -0.19
CPNE3-210ENST00000621245 ZNF236Q9UL36 1845 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 A0A1W2PRG0 241 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 IGSF3O75054 1194 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 TFRCP02786 760 aaKnown RBP13.87□□□□□ -0.19
CPNE3-210ENST00000621245 ADD2P35612 726 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 PSEN1P49768 467 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 KCNV2Q8TDN2 545 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 USP6NLQ92738 828 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 PAWRQ96IZ0 340 aaKnown RBP13.87□□□□□ -0.19
CPNE3-210ENST00000621245 MFRPQ9BY79 579 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 DCP1AQ9NPI6 582 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-210ENST00000621245 GINM1Q9NU53 330 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 PAG1Q9NWQ8 432 aa13.87□□□□□ -0.19
CPNE3-210ENST00000621245 BTBD7Q9P203 1132 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms