RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 USP14P54578 494 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L24Q0WX57 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 RAB3GAP1Q15042 981 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 ZYXQ15942 572 aaKnown RBP30.3■■■□□ 2.44
PTPRF-216ENST00000617451 ABCB5Q2M3G0 1257 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 HSP90AB4PQ58FF6 505 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 MORN1Q5T089 497 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 PLEKHH3Q7Z736 793 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 KIAA1683Q9H0B3 1180 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 IL1RAPL2Q9NP60 686 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 STAP2Q9UGK3 403 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 RABGAP1Q9Y3P9 1069 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 PLCD1P51178 756 aa30.29■■■□□ 2.44
PTPRF-216ENST00000617451 RHPN1Q8TCX5 695 aa30.29■■■□□ 2.44
PTPRF-216ENST00000617451 ZKSCAN1P17029 563 aaPredicted RBP30.28■■■□□ 2.44
PTPRF-216ENST00000617451 SHMT1P34896 483 aa30.28■■■□□ 2.44
PTPRF-216ENST00000617451 RGS2P41220 211 aa30.28■■■□□ 2.44
PTPRF-216ENST00000617451 CACNB2Q08289 660 aaPredicted RBP30.28■■■□□ 2.44
PTPRF-216ENST00000617451 TTF1Q15361 905 aaPredicted RBP30.28■■■□□ 2.44
PTPRF-216ENST00000617451 ACER1Q8TDN7 264 aa30.28■■■□□ 2.44
PTPRF-216ENST00000617451 MAGEB6P1A0A0J9YX57 407 aa30.27■■■□□ 2.44
PTPRF-216ENST00000617451 CNMDO75829 334 aa30.27■■■□□ 2.44
PTPRF-216ENST00000617451 CATSPERGQ6ZRH7 1159 aa30.27■■■□□ 2.44
PTPRF-216ENST00000617451 C11orf49Q9H6J7 331 aa30.27■■■□□ 2.44
PTPRF-216ENST00000617451 CABP5Q9NP86 173 aa30.27■■■□□ 2.44
PTPRF-216ENST00000617451 VCAM1P19320 739 aa30.26■■■□□ 2.43
PTPRF-216ENST00000617451 CCL14Q16627 93 aa30.26■■■□□ 2.43
PTPRF-216ENST00000617451 C7orf61Q8IZ16 206 aa30.26■■■□□ 2.43
PTPRF-216ENST00000617451 APBA2Q99767 749 aa30.26■■■□□ 2.43
PTPRF-216ENST00000617451 ZBED9Q6R2W3 1325 aa30.25■■■□□ 2.43
PTPRF-216ENST00000617451 POLR3DP05423 398 aaPredicted RBP30.25■■■□□ 2.43
PTPRF-216ENST00000617451 PDE6AP16499 860 aa30.25■■■□□ 2.43
PTPRF-216ENST00000617451 GABPAQ06546 454 aa30.25■■■□□ 2.43
PTPRF-216ENST00000617451 SLC9C2Q5TAH2 1124 aa30.25■■■□□ 2.43
PTPRF-216ENST00000617451 DDX60LQ5H9U9 1706 aaKnown RBP30.25■■■□□ 2.43
PTPRF-216ENST00000617451 GUCY1A2P33402 732 aa30.24■■■□□ 2.43
PTPRF-216ENST00000617451 CCNA1P78396 465 aa30.24■■■□□ 2.43
PTPRF-216ENST00000617451 LBX2Q6XYB7 198 aa30.24■■■□□ 2.43
PTPRF-216ENST00000617451 CLASRPQ8N2M8 674 aaKnown RBP30.24■■■□□ 2.43
PTPRF-216ENST00000617451 GDF15Q99988 308 aa30.24■■■□□ 2.43
PTPRF-216ENST00000617451 CRNKL1Q9BZJ0 848 aaKnown RBP30.24■■■□□ 2.43
PTPRF-216ENST00000617451 CWC22Q9HCG8 908 aaKnown RBP30.24■■■□□ 2.43
PTPRF-216ENST00000617451 MAP2K5Q13163 448 aa30.23■■■□□ 2.43
PTPRF-216ENST00000617451 PPIL4Q8WUA2 492 aaKnown RBP eCLIP30.23■■■□□ 2.43
PTPRF-216ENST00000617451 ZMYND8Q9ULU4 1186 aaPredicted RBP30.23■■■□□ 2.43
PTPRF-216ENST00000617451 GLRX3O76003 335 aaKnown RBP30.22■■■□□ 2.43
PTPRF-216ENST00000617451 MS4A1P11836 297 aa30.22■■■□□ 2.43
PTPRF-216ENST00000617451 CCND3P30281 292 aaPredicted RBP30.22■■■□□ 2.43
PTPRF-216ENST00000617451 BMP8BP34820 402 aa30.22■■■□□ 2.43
PTPRF-216ENST00000617451 LHX8Q68G74 356 aa30.22■■■□□ 2.43
PTPRF-216ENST00000617451 KIF1BPQ96EK5 621 aa30.22■■■□□ 2.43
PTPRF-216ENST00000617451 PFASO15067 1338 aa30.22■■■□□ 2.43
PTPRF-216ENST00000617451 ZNF532Q9HCE3 1301 aa30.22■■■□□ 2.43
PTPRF-216ENST00000617451 TCRBV5S4A2TA0A5A2 114 aa30.21■■■□□ 2.43
PTPRF-216ENST00000617451 SEPT2Q15019 361 aa30.21■■■□□ 2.43
PTPRF-216ENST00000617451 RPAP2Q8IXW5 612 aaPredicted RBP30.21■■■□□ 2.43
PTPRF-216ENST00000617451 EDC3Q96F86 508 aaKnown RBP30.21■■■□□ 2.43
PTPRF-216ENST00000617451 RPAP3Q9H6T3 665 aaPredicted RBP30.21■■■□□ 2.43
PTPRF-216ENST00000617451 MCM9Q9NXL9 1143 aa30.21■■■□□ 2.43
PTPRF-216ENST00000617451 BTBD7Q9P203 1132 aa30.21■■■□□ 2.43
PTPRF-216ENST00000617451 GOLIM4O00461 696 aa30.2■■■□□ 2.43
PTPRF-216ENST00000617451 SOX1O00570 391 aaPredicted RBP30.2■■■□□ 2.43
PTPRF-216ENST00000617451 COL6A1P12109 1028 aa30.2■■■□□ 2.43
PTPRF-216ENST00000617451 PTPREP23469 700 aa30.2■■■□□ 2.43
PTPRF-216ENST00000617451 EVX2Q03828 476 aa30.2■■■□□ 2.43
PTPRF-216ENST00000617451 SLC15A5A6NIM6 579 aa30.19■■■□□ 2.42
PTPRF-216ENST00000617451 SPDYE16A6NNV3 312 aaPredicted RBP30.19■■■□□ 2.42
PTPRF-216ENST00000617451 APBB1O00213 710 aa30.19■■■□□ 2.42
PTPRF-216ENST00000617451 IFIT2P09913 472 aaKnown RBP30.19■■■□□ 2.42
PTPRF-216ENST00000617451 SIRT2Q8IXJ6 389 aa30.19■■■□□ 2.42
PTPRF-216ENST00000617451 DNAJC2Q99543 621 aaKnown RBP30.19■■■□□ 2.42
PTPRF-216ENST00000617451 NAV1Q8NEY1 1877 aa30.19■■■□□ 2.42
PTPRF-216ENST00000617451 HMMRO75330 724 aa30.18■■■□□ 2.42
PTPRF-216ENST00000617451 WDR78Q5VTH9 848 aa30.18■■■□□ 2.42
PTPRF-216ENST00000617451 SDR42E1Q8WUS8 393 aa30.18■■■□□ 2.42
PTPRF-216ENST00000617451 DCP1AQ9NPI6 582 aaPredicted RBP30.18■■■□□ 2.42
PTPRF-216ENST00000617451 ZBTB40Q9NUA8 1239 aa30.18■■■□□ 2.42
PTPRF-216ENST00000617451 FLRT1Q9NZU1 646 aa30.18■■■□□ 2.42
PTPRF-216ENST00000617451 A0A1W2PRG0 241 aa30.17■■■□□ 2.42
PTPRF-216ENST00000617451 HOXC6P09630 235 aa30.17■■■□□ 2.42
PTPRF-216ENST00000617451 SYN1P17600 705 aa30.17■■■□□ 2.42
PTPRF-216ENST00000617451 DIEXFQ68CQ4 756 aaKnown RBP30.17■■■□□ 2.42
PTPRF-216ENST00000617451 LCORLQ8N3X6 602 aa30.17■■■□□ 2.42
PTPRF-216ENST00000617451 DNAH12Q6ZR08 3092 aa30.17■■■□□ 2.42
PTPRF-216ENST00000617451 MPHOSPH10O00566 681 aaKnown RBP30.16■■■□□ 2.42
PTPRF-216ENST00000617451 GRB14Q14449 540 aa30.16■■■□□ 2.42
PTPRF-216ENST00000617451 MFSD14CQ5VZR4 134 aa30.16■■■□□ 2.42
PTPRF-216ENST00000617451 LRCH3Q96II8 777 aa30.16■■■□□ 2.42
PTPRF-216ENST00000617451 DDX19BQ9UMR2 479 aa30.16■■■□□ 2.42
PTPRF-216ENST00000617451 COL6A3P12111 3177 aa30.15■■■□□ 2.42
PTPRF-216ENST00000617451 RAB11FIP3O75154 756 aa30.15■■■□□ 2.42
PTPRF-216ENST00000617451 IVNS1ABPQ9Y6Y0 642 aa30.15■■■□□ 2.42
PTPRF-216ENST00000617451 CYP2D6P10635 497 aa30.14■■■□□ 2.42
PTPRF-216ENST00000617451 MAGEA10P43363 369 aaPredicted RBP30.14■■■□□ 2.42
PTPRF-216ENST00000617451 COG2Q14746 738 aa30.14■■■□□ 2.42
PTPRF-216ENST00000617451 HOXC10Q9NYD6 342 aa30.14■■■□□ 2.42
PTPRF-216ENST00000617451 COG6Q9Y2V7 657 aa30.14■■■□□ 2.42
PTPRF-216ENST00000617451 TMEM179Q6ZVK1 233 aa30.13■■■□□ 2.41
PTPRF-216ENST00000617451 SLC44A5Q8NCS7 719 aa30.13■■■□□ 2.41
PTPRF-216ENST00000617451 ARMT1Q9H993 441 aa30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms