RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RBPJLQ9UBG7 517 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 FLT1P17948 1338 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 PHIPQ8WWQ0 1821 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 COL6A3P12111 3177 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 DNM1LO00429 736 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 MCAMP43121 646 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 RARSP54136 660 aaKnown RBP7.67□□□□□ -1.18
CUX1-220ENST00000607092 ATP2B2Q01814 1243 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 MAP3K12Q12852 859 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 MORN1Q5T089 497 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 TBC1D9Q6ZT07 1266 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 MAPKAPK5Q8IW41 473 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 MB21D1Q8N884 522 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 ZNF384Q8TF68 577 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 LPAR1Q92633 364 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 USP6NLQ92738 828 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 KIAA1683Q9H0B3 1180 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 SH2D4AQ9H788 454 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 HOXC10Q9NYD6 342 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 DDX20Q9UHI6 824 aaKnown RBP7.67□□□□□ -1.18
CUX1-220ENST00000607092 SERPINB13Q9UIV8 391 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 DOCK3Q8IZD9 2030 aa7.67□□□□□ -1.18
CUX1-220ENST00000607092 KBTBD13C9JR72 458 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 SYN1P17600 705 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 USP5P45974 858 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 TNNI3KQ59H18 835 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 WDR78Q5VTH9 848 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 LHX8Q68G74 356 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 TATDN1Q6P1N9 297 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 ERC1Q8IUD2 1116 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.66□□□□□ -1.18
CUX1-220ENST00000607092 PALD1Q9ULE6 856 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 FPGT-TNNI3KV9GXZ4 949 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 PFASO15067 1338 aa7.66□□□□□ -1.18
CUX1-220ENST00000607092 TMEM265A0A087WTH1 108 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 POTEB2H3BUK9 544 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 GDF11O95390 407 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 GH2P01242 217 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 CYP7A1P22680 504 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 PTPREP23469 700 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 CNGA1P29973 690 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 TRIM32Q13049 653 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 GRB14Q14449 540 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 TTF1Q15361 905 aaPredicted RBP7.65□□□□□ -1.18
CUX1-220ENST00000607092 ABCB5Q2M3G0 1257 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 CERKLQ49MI3 558 aaPredicted RBP7.65□□□□□ -1.18
CUX1-220ENST00000607092 DDX60LQ5H9U9 1706 aaKnown RBP7.65□□□□□ -1.18
CUX1-220ENST00000607092 ZNF697Q5TEC3 545 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 OLFML2BQ68BL8 750 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 PI16Q6UXB8 463 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 CATSPERGQ6ZRH7 1159 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 DPP9Q86TI2 863 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.65□□□□□ -1.184e-7■■■□□ 15
CUX1-220ENST00000607092 SHCBP1Q8NEM2 672 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 SPDYE1Q8NFV5 336 aaPredicted RBP7.65□□□□□ -1.18
CUX1-220ENST00000607092 SENP6Q9GZR1 1112 aaPredicted RBP7.65□□□□□ -1.18
CUX1-220ENST00000607092 PORCNQ9H237 461 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 TXNRD2Q9NNW7 524 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 EMILIN3Q9NT22 766 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 NRBP1Q9UHY1 535 aa7.65□□□□□ -1.18
CUX1-220ENST00000607092 ATAD5Q96QE3 1844 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 MAST2Q6P0Q8 1798 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 SURF6O75683 361 aaKnown RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 IDH1O75874 414 aaKnown RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 CYP2E1P05181 493 aaPredicted RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 VCAM1P19320 739 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 CCND3P30281 292 aaPredicted RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 COPB2P35606 906 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 RRP1BQ14684 758 aaKnown RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 COG2Q14746 738 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 RAB3GAP1Q15042 981 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 LRRC26Q2I0M4 334 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 Q3C1V9 767 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 HSP90AB4PQ58FF6 505 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 ZKSCAN2Q63HK3 967 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 AMOTL1Q8IY63 956 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 ABRAQ8N0Z2 381 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 SSH3Q8TE77 659 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 SYMPKQ92797 1274 aaKnown RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 CDCA7LQ96GN5 454 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 CRNKL1Q9BZJ0 848 aaKnown RBP7.64□□□□□ -1.19
CUX1-220ENST00000607092 MROH8Q9H579 483 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 DNAJC18Q9H819 358 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 SNRKQ9NRH2 765 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 SWAP70Q9UH65 585 aa7.64□□□□□ -1.19
CUX1-220ENST00000607092 SEPT4O43236 478 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 SLC25A27O95847 323 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 POLR3DP05423 398 aaPredicted RBP7.63□□□□□ -1.19
CUX1-220ENST00000607092 SLURP2P0DP57 97 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 TRIM27P14373 513 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 ZAP70P43403 619 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 SMAD3P84022 425 aaKnown RBP7.63□□□□□ -1.19
CUX1-220ENST00000607092 ATP8B2P98198 1209 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 MDM2Q00987 491 aaPredicted RBP7.63□□□□□ -1.19
CUX1-220ENST00000607092 CCL14Q16627 93 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 C1orf53Q5VUE5 145 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 CCDC174Q6PII3 467 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 Q7L0L9 218 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 FTSJ3Q8IY81 847 aaKnown RBP7.63□□□□□ -1.19
CUX1-220ENST00000607092 FRAT1Q92837 279 aaPredicted RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms