RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 USP17L13C9JLJ4 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L11C9JVI0 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L18D6R9N7 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L22D6RA61 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L17D6RBQ6 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L19D6RCP7 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L20D6RJB6 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 GH2P01242 217 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 ZKSCAN1P17029 563 aaPredicted RBP7.5□□□□□ -1.21
VRK3-220ENST00000600259 RGS2P41220 211 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 MDM2Q00987 491 aaPredicted RBP7.5□□□□□ -1.21
VRK3-220ENST00000600259 USP17L24Q0WX57 530 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 ATF7IPQ6VMQ6 1270 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 NPLOC4Q8TAT6 608 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 ACER1Q8TDN7 264 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 GTF3C2Q8WUA4 911 aaPredicted RBP7.5□□□□□ -1.21
VRK3-220ENST00000600259 GUCD1Q96NT3 240 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 APBA2Q99767 749 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 PAGR1Q9BTK6 254 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 KIAA1683Q9H0B3 1180 aa7.5□□□□□ -1.21
VRK3-220ENST00000600259 DBNLQ9UJU6 430 aaKnown RBP7.5□□□□□ -1.21
VRK3-220ENST00000600259 UNC80Q8N2C7 3258 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 SLC15A5A6NIM6 579 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 CYP7A1P22680 504 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 SHMT1P34896 483 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 PLCD1P51178 756 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 GABPAQ06546 454 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 PDE3AQ14432 1141 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 GRB14Q14449 540 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 CCDC158Q5M9N0 1113 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 TTC39AQ5SRH9 613 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 CRACR2BQ8N4Y2 399 aaPredicted RBP7.49□□□□□ -1.21
VRK3-220ENST00000600259 TMEM57Q8N5G2 664 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 EAF2Q96CJ1 260 aaPredicted RBP7.49□□□□□ -1.21
VRK3-220ENST00000600259 NOL10Q9BSC4 688 aaKnown RBP7.49□□□□□ -1.21
VRK3-220ENST00000600259 COL25A1Q9BXS0 654 aaPredicted RBP7.49□□□□□ -1.21
VRK3-220ENST00000600259 EHD4Q9H223 541 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 TLR7Q9NYK1 1049 aaKnown RBP7.49□□□□□ -1.21
VRK3-220ENST00000600259 NDUFB9Q9Y6M9 179 aa7.49□□□□□ -1.21
VRK3-220ENST00000600259 DDX60LQ5H9U9 1706 aaKnown RBP7.49□□□□□ -1.21
VRK3-220ENST00000600259 A0A1W2PRG0 241 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 SPDYE16A6NNV3 312 aaPredicted RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 IPO8O15397 1037 aaKnown RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 SURF6O75683 361 aaKnown RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 VCAM1P19320 739 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 CYP2C19P33261 490 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 EVX2Q03828 476 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 KIAA1755Q5JYT7 1200 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 MFSD14CQ5VZR4 134 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 SIAH1Q8IUQ4 282 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 MIGA1Q8NAN2 632 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 LPAR1Q92633 364 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 CLUAP1Q96AJ1 413 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 RIOK1Q9BRS2 568 aaKnown RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 SENP6Q9GZR1 1112 aaPredicted RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 CCDC8Q9H0W5 538 aaPredicted RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 ANTXR1Q9H6X2 564 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 DDX20Q9UHI6 824 aaKnown RBP7.48□□□□□ -1.21
VRK3-220ENST00000600259 SERPINB13Q9UIV8 391 aa7.48□□□□□ -1.21
VRK3-220ENST00000600259 TTC28Q96AY4 2481 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 COBLO75128 1261 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 HLA-DOAP06340 250 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 CYBAP13498 195 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 ATN1P54259 1190 aaPredicted RBP7.47□□□□□ -1.21
VRK3-220ENST00000600259 USP14P54578 494 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 CCNA1P78396 465 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 ATP2B2Q01814 1243 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 ZYXQ15942 572 aaKnown RBP7.47□□□□□ -1.21
VRK3-220ENST00000600259 CERKLQ49MI3 558 aaPredicted RBP7.47□□□□□ -1.21
VRK3-220ENST00000600259 SLC39A5Q6ZMH5 540 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 RPAP3Q9H6T3 665 aaPredicted RBP7.47□□□□□ -1.21
VRK3-220ENST00000600259 ATAD5Q96QE3 1844 aa7.47□□□□□ -1.21
VRK3-220ENST00000600259 DNM1LO00429 736 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 STRNO43815 780 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 MSCO60682 206 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 IDH1O75874 414 aaKnown RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 GLRX3O76003 335 aaKnown RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 RLBP1P12271 317 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 USP5P45974 858 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 RTP1P59025 263 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 COG2Q14746 738 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 SEPT2Q15019 361 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 SNX17Q15036 470 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 RAB3GAP1Q15042 981 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 SHHQ15465 462 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 ABCB5Q2M3G0 1257 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 C9orf50Q5SZB4 431 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 GJC2Q5T442 439 aaPredicted RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 OLFML2BQ68BL8 750 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 TMED8Q6PL24 325 aaPredicted RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 TTC6Q86TZ1 520 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.46□□□□□ -1.22
VRK3-220ENST00000600259 CCAR1Q8IX12 1150 aaKnown RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 MAGEB6Q8N7X4 407 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 SHCBP1Q8NEM2 672 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 FRAT1Q92837 279 aaPredicted RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 MOV10L1Q9BXT6 1211 aaKnown RBP7.46□□□□□ -1.22
VRK3-220ENST00000600259 SEMA6BQ9H3T3 888 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 C1orf115Q9H7X2 142 aa7.46□□□□□ -1.22
VRK3-220ENST00000600259 SPTBN5Q9NRC6 3674 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms