RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PORCNQ9H237 461 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 SERPINB13Q9UIV8 391 aa15.25■□□□□ 0.03
TRIM28-212ENST00000597995 ZMYND8Q9ULU4 1186 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-212ENST00000597995 DDX60LQ5H9U9 1706 aaKnown RBP15.24■□□□□ 0.03
TRIM28-212ENST00000597995 GLRX3O76003 335 aaKnown RBP15.24■□□□□ 0.03
TRIM28-212ENST00000597995 COL6A1P12109 1028 aa15.24■□□□□ 0.03
TRIM28-212ENST00000597995 USP14P54578 494 aa15.24■□□□□ 0.03
TRIM28-212ENST00000597995 CCNA1P78396 465 aa15.24■□□□□ 0.03
TRIM28-212ENST00000597995 APBA2Q99767 749 aa15.24■□□□□ 0.03
TRIM28-212ENST00000597995 PAGR1Q9BTK6 254 aa15.24■□□□□ 0.03
TRIM28-212ENST00000597995 KIAA1683Q9H0B3 1180 aa15.24■□□□□ 0.03
TRIM28-212ENST00000597995 TLR7Q9NYK1 1049 aaKnown RBP15.24■□□□□ 0.03
TRIM28-212ENST00000597995 PFASO15067 1338 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 MAP3K12Q12852 859 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 MAP2K5Q13163 448 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 LRIT3Q3SXY7 679 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 LHX8Q68G74 356 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 CEP85Q6P2H3 762 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 LBX2Q6XYB7 198 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 CATSPERGQ6ZRH7 1159 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 MAGEB6Q8N7X4 407 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 MIGA1Q8NAN2 632 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 SLC17A8Q8NDX2 589 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 FEZ1Q99689 392 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 MYH1P12882 1939 aa15.23■□□□□ 0.03
TRIM28-212ENST00000597995 CNMDO75829 334 aa15.22■□□□□ 0.03
TRIM28-212ENST00000597995 SYN1P17600 705 aa15.22■□□□□ 0.03
TRIM28-212ENST00000597995 CCND3P30281 292 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-212ENST00000597995 MAGEA10P43363 369 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-212ENST00000597995 CCL14Q16627 93 aa15.22■□□□□ 0.03
TRIM28-212ENST00000597995 ABCB5Q2M3G0 1257 aa15.22■□□□□ 0.03
TRIM28-212ENST00000597995 CERKLQ49MI3 558 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-212ENST00000597995 EDC3Q96F86 508 aaKnown RBP15.22■□□□□ 0.03
TRIM28-212ENST00000597995 CWC22Q9HCG8 908 aaKnown RBP15.22■□□□□ 0.03
TRIM28-212ENST00000597995 CABP5Q9NP86 173 aa15.22■□□□□ 0.03
TRIM28-212ENST00000597995 SLC15A5A6NIM6 579 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 RAB3GAP1Q15042 981 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 MFSD14CQ5VZR4 134 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 ERC1Q8IUD2 1116 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 TDHQ8IZJ6 230 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 RCAN3Q9UKA8 241 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 COL6A3P12111 3177 aa15.21■□□□□ 0.03
TRIM28-212ENST00000597995 MSCO60682 206 aa15.2■□□□□ 0.02
TRIM28-212ENST00000597995 HOXC6P09630 235 aa15.2■□□□□ 0.02
TRIM28-212ENST00000597995 VCAM1P19320 739 aa15.2■□□□□ 0.02
TRIM28-212ENST00000597995 PTPREP23469 700 aa15.2■□□□□ 0.02
TRIM28-212ENST00000597995 ZYXQ15942 572 aaKnown RBP15.2■□□□□ 0.02
TRIM28-212ENST00000597995 RIOK1Q9BRS2 568 aaKnown RBP15.2■□□□□ 0.02
TRIM28-212ENST00000597995 UBE2OQ9C0C9 1292 aaKnown RBP15.2■□□□□ 0.02
TRIM28-212ENST00000597995 ANTXR1Q9H6X2 564 aa15.2■□□□□ 0.02
TRIM28-212ENST00000597995 COG6Q9Y2V7 657 aa15.2■□□□□ 0.02
TRIM28-212ENST00000597995 SHMT1P34896 483 aa15.19■□□□□ 0.02
TRIM28-212ENST00000597995 PLCD1P51178 756 aa15.19■□□□□ 0.02
TRIM28-212ENST00000597995 TTF1Q15361 905 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-212ENST00000597995 AACSQ86V21 672 aa15.19■□□□□ 0.02
TRIM28-212ENST00000597995 ACER1Q8TDN7 264 aa15.19■□□□□ 0.02
TRIM28-212ENST00000597995 NDUFB9Q9Y6M9 179 aa15.19■□□□□ 0.02
TRIM28-212ENST00000597995 IVNS1ABPQ9Y6Y0 642 aa15.19■□□□□ 0.02
TRIM28-212ENST00000597995 MAGEB6P1A0A0J9YX57 407 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 POLR3DP05423 398 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-212ENST00000597995 GUCY1A2P33402 732 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 ATP2B2Q01814 1243 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 GABPAQ06546 454 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 GRB14Q14449 540 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 LRRC26Q2I0M4 334 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 HSP90AB4PQ58FF6 505 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 C20orf194Q5TEA3 1177 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 WDR78Q5VTH9 848 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 SIRT2Q8IXJ6 389 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 DEFB123Q8N688 67 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 RPAP3Q9H6T3 665 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-212ENST00000597995 ZBTB40Q9NUA8 1239 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 FLRT1Q9NZU1 646 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 BTBD7Q9P203 1132 aa15.18■□□□□ 0.02
TRIM28-212ENST00000597995 SPDYE16A6NNV3 312 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-212ENST00000597995 DLL1O00548 723 aa15.17■□□□□ 0.02
TRIM28-212ENST00000597995 STRNO43815 780 aa15.17■□□□□ 0.02
TRIM28-212ENST00000597995 IGHA2P01877 340 aa15.17■□□□□ 0.02
TRIM28-212ENST00000597995 LPAR1Q92633 364 aa15.17■□□□□ 0.02
TRIM28-212ENST00000597995 CRNKL1Q9BZJ0 848 aaKnown RBP15.17■□□□□ 0.02
TRIM28-212ENST00000597995 HOXC10Q9NYD6 342 aa15.17■□□□□ 0.02
TRIM28-212ENST00000597995 DDX20Q9UHI6 824 aaKnown RBP15.17■□□□□ 0.02
TRIM28-212ENST00000597995 EXOC6BQ9Y2D4 811 aa15.17■□□□□ 0.02
TRIM28-212ENST00000597995 MS4A1P11836 297 aa15.16■□□□□ 0.02
TRIM28-212ENST00000597995 COG2Q14746 738 aa15.16■□□□□ 0.02
TRIM28-212ENST00000597995 SEPT2Q15019 361 aa15.16■□□□□ 0.02
TRIM28-212ENST00000597995 SLC9C2Q5TAH2 1124 aa15.16■□□□□ 0.02
TRIM28-212ENST00000597995 NPLOC4Q8TAT6 608 aa15.16■□□□□ 0.02
TRIM28-212ENST00000597995 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.16■□□□□ 0.02
TRIM28-212ENST00000597995 STXBP5LQ9Y2K9 1186 aa15.16■□□□□ 0.02
TRIM28-212ENST00000597995 A0A0C4DFX4 3053 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 DNM1LO00429 736 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 PDE6AP16499 860 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 SHCBP1Q8NEM2 672 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 RHPN1Q8TCX5 695 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 SENP6Q9GZR1 1112 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-212ENST00000597995 MTMR10Q9NXD2 777 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 MCM9Q9NXL9 1143 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 DDX19BQ9UMR2 479 aa15.15■□□□□ 0.02
TRIM28-212ENST00000597995 A0A1W2PRG0 241 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms