RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ZNRF3Q9ULT6 936 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 SCO2A0A1W2PP80 73 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 EOMESO95936 686 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 ITIH2P19823 946 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 SFRP5Q5T4F7 317 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 NLRC3Q7RTR2 1065 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 TMEM40Q8WWA1 233 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 SEC16BQ96JE7 1060 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 KIF2CQ99661 725 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 CEP131Q9UPN4 1083 aa7.79□□□□□ -1.16
SMAD4-216ENST00000593223 SOX9P48436 509 aa7.78□□□□□ -1.16
SMAD4-216ENST00000593223 BAHD1Q8TBE0 780 aaPredicted RBP7.78□□□□□ -1.16
SMAD4-216ENST00000593223 ATG4CQ96DT6 458 aa7.78□□□□□ -1.16
SMAD4-216ENST00000593223 HEXIM2Q96MH2 286 aaKnown RBP7.78□□□□□ -1.16
SMAD4-216ENST00000593223 MAPK8IP1Q9UQF2 711 aa7.78□□□□□ -1.16
SMAD4-216ENST00000593223 CBX7O95931 251 aa7.77□□□□□ -1.17
SMAD4-216ENST00000593223 EIF6P56537 245 aaKnown RBP7.77□□□□□ -1.17
SMAD4-216ENST00000593223 ZC3H6P61129 1189 aaKnown RBP7.77□□□□□ -1.17
SMAD4-216ENST00000593223 SRRTQ9BXP5 876 aaKnown RBP7.77□□□□□ -1.17
SMAD4-216ENST00000593223 PCMTD2Q9NV79 361 aa7.77□□□□□ -1.17
SMAD4-216ENST00000593223 ZC3H7BQ9UGR2 993 aaKnown RBP7.77□□□□□ -1.17
SMAD4-216ENST00000593223 TTBK1Q5TCY1 1321 aaPredicted RBP7.77□□□□□ -1.17
SMAD4-216ENST00000593223 FAM155AB1AL88 458 aaPredicted RBP7.76□□□□□ -1.17
SMAD4-216ENST00000593223 IGF2BP3O00425 579 aaKnown RBP eCLIP7.76□□□□□ -1.17
SMAD4-216ENST00000593223 RGS13O14921 159 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 ATF4P18848 351 aaPredicted RBP7.76□□□□□ -1.17
SMAD4-216ENST00000593223 DNAJA1P31689 397 aaKnown RBP7.76□□□□□ -1.17
SMAD4-216ENST00000593223 ARID5AQ03989 594 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 CDCP2Q5VXM1 449 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 FAM214BQ7L5A3 538 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 NETO1Q8TDF5 533 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 TINF2Q9BSI4 451 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 CNNM2Q9H8M5 875 aa7.76□□□□□ -1.17
SMAD4-216ENST00000593223 CECR2Q9BXF3 1484 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 FAM86C2PA6NEL3 165 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 MEIS3P2A8K0S8 358 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 SSBP05455 408 aaKnown RBP eCLIP7.75□□□□□ -1.17
SMAD4-216ENST00000593223 CEACAM5P06731 702 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 NME1P15531 152 aaKnown RBP7.75□□□□□ -1.17
SMAD4-216ENST00000593223 POLR2BP30876 1174 aaKnown RBP7.75□□□□□ -1.17
SMAD4-216ENST00000593223 OXCT1P55809 520 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 PLD6Q8N2A8 252 aaKnown RBP7.75□□□□□ -1.17
SMAD4-216ENST00000593223 DNAJB8Q8NHS0 232 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 COX4I2Q96KJ9 171 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 MKNK2Q9HBH9 465 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 STRIP2Q9ULQ0 834 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 CNTNAP4Q9C0A0 1308 aa7.75□□□□□ -1.17
SMAD4-216ENST00000593223 MED26O95402 600 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 CD97P48960 835 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 IFI16Q16666 785 aaKnown RBP7.74□□□□□ -1.17
SMAD4-216ENST00000593223 NAALADL2Q58DX5 795 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 MFSD4AQ8N468 514 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 PPP1R13LQ8WUF5 828 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 ANAPC16Q96DE5 110 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 TM9SF2Q99805 663 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.74□□□□□ -1.17
SMAD4-216ENST00000593223 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.74□□□□□ -1.17
SMAD4-216ENST00000593223 U3KQE9 123 aa7.74□□□□□ -1.17
SMAD4-216ENST00000593223 PRR33A8MZF0 331 aa7.73□□□□□ -1.17
SMAD4-216ENST00000593223 LRP8Q14114 963 aa7.73□□□□□ -1.17
SMAD4-216ENST00000593223 MSMPQ1L6U9 139 aa7.73□□□□□ -1.17
SMAD4-216ENST00000593223 RUFY4Q6ZNE9 571 aa7.73□□□□□ -1.17
SMAD4-216ENST00000593223 LSRQ86X29 649 aaPredicted RBP7.73□□□□□ -1.17
SMAD4-216ENST00000593223 RBBP8NLQ8NC74 664 aaPredicted RBP7.73□□□□□ -1.17
SMAD4-216ENST00000593223 KREMEN1Q96MU8 473 aa7.73□□□□□ -1.17
SMAD4-216ENST00000593223 BSDC1Q9NW68 430 aaPredicted RBP7.73□□□□□ -1.17
SMAD4-216ENST00000593223 TMEM265A0A087WTH1 108 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 TNFRSF10CO14798 259 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 CLEC3AO75596 197 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 UBOX5O94941 541 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 GUCY2CP25092 1073 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 CCNFP41002 786 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 KIR3DL1P43629 444 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 PPP2R5EQ16537 467 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 CDKAL1Q5VV42 579 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 OR6P1Q8NGX9 317 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 RNF141Q8WVD5 230 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 SLC9A7Q96T83 725 aa7.72□□□□□ -1.17
SMAD4-216ENST00000593223 ANGEL1Q9UNK9 670 aaKnown RBP7.72□□□□□ -1.17
SMAD4-216ENST00000593223 HYAL3O43820 417 aaPredicted RBP7.71□□□□□ -1.18
SMAD4-216ENST00000593223 GIPRP48546 466 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 RNF4P78317 190 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 INTS3Q68E01 1043 aaKnown RBP7.71□□□□□ -1.18
SMAD4-216ENST00000593223 SLC43A3Q8NBI5 491 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 SLC6A18Q96N87 628 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 ASPNQ9BXN1 380 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 KCNH3Q9ULD8 1083 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 PLAGL2Q9UPG8 496 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 MRVI1Q9Y6F6 885 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 CAPN6Q9Y6Q1 641 aa7.71□□□□□ -1.18
SMAD4-216ENST00000593223 ZNF865P0CJ78 1059 aaPredicted RBP7.7□□□□□ -1.18
SMAD4-216ENST00000593223 NKPD1Q17RQ9 610 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 C22orf34Q6ZV56 151 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 DTX1Q86Y01 620 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 SPACA3Q8IXA5 215 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 SHDQ96IW2 340 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 HRASLS5Q96KN8 279 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 DHRS1Q96LJ7 313 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 ZFP64Q9NPA5 681 aa7.7□□□□□ -1.18
SMAD4-216ENST00000593223 KIAA1324LA8MWY0 1029 aaPredicted RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms