RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MAFAQ8NHW3 353 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-202ENST00000588059 NPLOC4Q8TAT6 608 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 CDCA7LQ96GN5 454 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 PRKAG2Q9UGJ0 569 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 SAP30BPQ9UHR5 308 aaKnown RBP13.57□□□□□ -0.24
VPS4B-202ENST00000588059 CDH23Q9H251 3354 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L15C9J2P7 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L13C9JLJ4 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L11C9JVI0 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L18D6R9N7 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L22D6RA61 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L17D6RBQ6 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L19D6RCP7 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L20D6RJB6 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 GH2P01242 217 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 IGHA2P01877 340 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 GNAI3P08754 354 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 CYBAP13498 195 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 CNGA1P29973 690 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 CYP2C19P33261 490 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 USP17L24Q0WX57 530 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 ZYXQ15942 572 aaKnown RBP13.56□□□□□ -0.24
VPS4B-202ENST00000588059 WDR78Q5VTH9 848 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 FEZ1Q99689 392 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 SEMA6BQ9H3T3 888 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 SNRKQ9NRH2 765 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 ATP11BQ9Y2G3 1177 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 A0A0G2JMZ2 1700 aa13.56□□□□□ -0.24
VPS4B-202ENST00000588059 HLA-DOAP06340 250 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 VCAM1P19320 739 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 ATP2B2Q01814 1243 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 GJC2Q5T442 439 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-202ENST00000588059 LBX2Q6XYB7 198 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 CATSPERGQ6ZRH7 1159 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 MYLIPQ8WY64 445 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 TTYH1Q9H313 450 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-202ENST00000588059 BTBD7Q9P203 1132 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 IVNS1ABPQ9Y6Y0 642 aa13.55□□□□□ -0.24
VPS4B-202ENST00000588059 PNMA6EA0A0J9YXQ4 647 aa13.54□□□□□ -0.24
VPS4B-202ENST00000588059 SPDYE16A6NNV3 312 aaPredicted RBP13.54□□□□□ -0.24
VPS4B-202ENST00000588059 CYP2E1P05181 493 aaPredicted RBP13.54□□□□□ -0.24
VPS4B-202ENST00000588059 CT47B1P0C2W7 299 aaPredicted RBP13.54□□□□□ -0.24
VPS4B-202ENST00000588059 ATF7IPQ6VMQ6 1270 aa13.54□□□□□ -0.24
VPS4B-202ENST00000588059 TRMT2AQ8IZ69 625 aaKnown RBP13.54□□□□□ -0.24
VPS4B-202ENST00000588059 KIAA1683Q9H0B3 1180 aa13.54□□□□□ -0.24
VPS4B-202ENST00000588059 PRDM6Q9NQX0 595 aa13.54□□□□□ -0.24
VPS4B-202ENST00000588059 TTC28Q96AY4 2481 aa13.54□□□□□ -0.24
VPS4B-202ENST00000588059 USP14P54578 494 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 DYNLL1P63167 89 aaKnown RBP13.53□□□□□ -0.24
VPS4B-202ENST00000588059 SMAD3P84022 425 aaKnown RBP13.53□□□□□ -0.24
VPS4B-202ENST00000588059 SNX17Q15036 470 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 TRIM60Q495X7 471 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 TTC39AQ5SRH9 613 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 TATDN1Q6P1N9 297 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 SLC39A5Q6ZMH5 540 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 ACER1Q8TDN7 264 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 BADQ92934 168 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 DBNDD2Q9BQY9 259 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 PRDM5Q9NQX1 630 aaPredicted RBP13.53□□□□□ -0.24
VPS4B-202ENST00000588059 PDLIM7Q9NR12 457 aa13.53□□□□□ -0.24
VPS4B-202ENST00000588059 KBTBD13C9JR72 458 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 G3BP1Q13283 466 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS4B-202ENST00000588059 RAB3GAP1Q15042 981 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 ANO1Q5XXA6 986 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 OLFML2BQ68BL8 750 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 ARRDC4Q8NCT1 418 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 EHD4Q9H223 541 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 RPAP3Q9H6T3 665 aaPredicted RBP13.52□□□□□ -0.25
VPS4B-202ENST00000588059 PIH1D3Q9NQM4 214 aaKnown RBP13.52□□□□□ -0.25
VPS4B-202ENST00000588059 NAV1Q8NEY1 1877 aa13.52□□□□□ -0.25
VPS4B-202ENST00000588059 CCER2I3L3R5 266 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 SEPT4O43236 478 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 FOSL2P15408 326 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 CYP7A1P22680 504 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 ADORA2AP29274 412 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 ZAP70P43403 619 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 TNNI3KQ59H18 835 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 SH3RF1Q7Z6J0 888 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 ARHGAP45Q92619 1136 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 GPR108Q9NPR9 543 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 SERPINB13Q9UIV8 391 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 FPGT-TNNI3KV9GXZ4 949 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 SMCHD1A6NHR9 2005 aa13.51□□□□□ -0.25
VPS4B-202ENST00000588059 PARP14Q460N5 1801 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 TRIM43BA6NCK2 446 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 IGSF3O75054 1194 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 GNAI2P04899 355 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 RARSP54136 660 aaKnown RBP13.5□□□□□ -0.25
VPS4B-202ENST00000588059 ABCB5Q2M3G0 1257 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 CERKLQ49MI3 558 aaPredicted RBP13.5□□□□□ -0.25
VPS4B-202ENST00000588059 CCDC158Q5M9N0 1113 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 DPP9Q86TI2 863 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 MIGA1Q8NAN2 632 aa13.5□□□□□ -0.25
VPS4B-202ENST00000588059 TRIM43Q96BQ3 446 aaPredicted RBP13.5□□□□□ -0.25
VPS4B-202ENST00000588059 ZNF512BQ96KM6 892 aaPredicted RBP13.5□□□□□ -0.25
VPS4B-202ENST00000588059 MOV10L1Q9BXT6 1211 aaKnown RBP13.5□□□□□ -0.25
VPS4B-202ENST00000588059 ZNFX1Q9P2E3 1918 aaKnown RBP13.5□□□□□ -0.25
VPS4B-202ENST00000588059 TMEM265A0A087WTH1 108 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 COBLO75128 1261 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 MYCNP04198 464 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms