RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 KIF23Q02241 960 aaPredicted RBP18.33■□□□□ 0.52
SS18-216ENST00000580751 ICA1Q05084 483 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 CCDC84Q86UT8 332 aaPredicted RBP18.33■□□□□ 0.52
SS18-216ENST00000580751 NEDD1Q8NHV4 660 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 ESR2Q92731 530 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 IL17RAQ96F46 866 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 KANSL2Q9H9L4 492 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 NEDD4P46934 1319 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 TRIM75PA6NK02 468 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 TFAP4Q01664 338 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 TRDNQ13061 729 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 SPP2Q13103 211 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 NECTIN1Q15223 517 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 RRP12Q5JTH9 1297 aaKnown RBP18.32■□□□□ 0.52
SS18-216ENST00000580751 PPP4R3BQ5MIZ7 849 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 FEZ1Q99689 392 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 KRT23Q9C075 422 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 SH2D4AQ9H788 454 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 INCENPQ9NQS7 918 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 TACC3Q9Y6A5 838 aa18.32■□□□□ 0.52
SS18-216ENST00000580751 CCL15-CCL14A0A0B4J2E2 113 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 USP17L10C9JJH3 530 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 CCL15Q16663 113 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 FAM47AQ5JRC9 791 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 CREB3L3Q68CJ9 461 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 MS4A4AQ96JQ5 239 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.31■□□□□ 0.52
SS18-216ENST00000580751 ARHGEF10LQ9HCE6 1279 aa18.31■□□□□ 0.52
SS18-216ENST00000580751 RBM19Q9Y4C8 960 aaKnown RBP18.31■□□□□ 0.52
SS18-216ENST00000580751 PCNTO95613 3336 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 PTPRFP10586 1907 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 A0A0G2JLL6 359 aaPredicted RBP18.3■□□□□ 0.52
SS18-216ENST00000580751 TESPA1A2RU30 521 aaPredicted RBP18.3■□□□□ 0.52
SS18-216ENST00000580751 C19orf81C9J6K1 198 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 SLC27A2O14975 620 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 ZKSCAN1P17029 563 aaPredicted RBP18.3■□□□□ 0.52
SS18-216ENST00000580751 HSPA4P34932 840 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 BACE1P56817 501 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 FASTKD5Q7L8L6 764 aaKnown RBP18.3■□□□□ 0.52
SS18-216ENST00000580751 PRRT2Q7Z6L0 340 aaPredicted RBP18.3■□□□□ 0.52
SS18-216ENST00000580751 ZIC5Q96T25 663 aa18.3■□□□□ 0.52
SS18-216ENST00000580751 IGKV6D-41A0A0C4DH26 115 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 E7EWF7 191 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 TM4SF4P48230 202 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 USP14P54578 494 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 MAP2K1Q02750 393 aaPredicted RBP18.29■□□□□ 0.52
SS18-216ENST00000580751 MTMR2Q13614 643 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 OTUD7BQ6GQQ9 843 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 RALYLQ86SE5 291 aaKnown RBP18.29■□□□□ 0.52
SS18-216ENST00000580751 CLEC10AQ8IUN9 316 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 BRI3BPQ8WY22 251 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 KCNB2Q92953 911 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 CEP95Q96GE4 821 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 KIAA1683Q9H0B3 1180 aa18.29■□□□□ 0.52
SS18-216ENST00000580751 LOC285556D6RIA3 1793 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 B4E1Z4 1266 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 KDM4AO75164 1064 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 TTLL1O95922 423 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 EEF2P13639 858 aaKnown RBP18.28■□□□□ 0.52
SS18-216ENST00000580751 HMGCS2P54868 508 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 SH3D19Q5HYK7 790 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 USP17L2Q6R6M4 530 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 IQCA1Q86XH1 822 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 JMYQ8N9B5 988 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 PROCA1Q8NCQ7 364 aaPredicted RBP18.28■□□□□ 0.52
SS18-216ENST00000580751 NCOA7Q8NI08 942 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 ACER1Q8TDN7 264 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 TCP11L1Q9NUJ3 509 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 MTMR4Q9NYA4 1195 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 TMOD4Q9NZQ9 345 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 NYAP2Q9P242 653 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 SYNPO2Q9UMS6 1093 aa18.28■□□□□ 0.52
SS18-216ENST00000580751 ALDH1A1P00352 501 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 ATP2B2Q01814 1243 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 KRT32Q14532 448 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 TSGA10IPQ3SY00 556 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 CCDC178Q5BJE1 867 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 ZCCHC17Q9NP64 241 aaKnown RBP18.27■□□□□ 0.52
SS18-216ENST00000580751 TMX2Q9Y320 296 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 TAF6LQ9Y6J9 622 aa18.27■□□□□ 0.52
SS18-216ENST00000580751 A0A1W2PRG0 241 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 MOGSQ13724 837 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 GADL1Q6ZQY3 521 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 STOX1Q6ZVD7 989 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 ANKRD23Q86SG2 305 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 IFNL1Q8IU54 200 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 SIAH1Q8IUQ4 282 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 C12orf42Q96LP6 360 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 BEGAINQ9BUH8 593 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 STX8Q9UNK0 236 aa18.26■□□□□ 0.51
SS18-216ENST00000580751 IGF2BP3O00425 579 aaKnown RBP eCLIP18.25■□□□□ 0.51
SS18-216ENST00000580751 ANP32AP39687 249 aaKnown RBP18.25■□□□□ 0.51
SS18-216ENST00000580751 ZYXQ15942 572 aaKnown RBP18.25■□□□□ 0.51
SS18-216ENST00000580751 LPAR1Q92633 364 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 PTPN18Q99952 460 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 UBAC1Q9BSL1 405 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 GOPCQ9HD26 462 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 IL17RBQ9NRM6 502 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 ZSWIM5Q9P217 1185 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 CLIP2Q9UDT6 1046 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms