RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 RASA1P20936 1047 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 PPARAQ07869 468 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 USP17L2Q6R6M4 530 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 CWC27Q6UX04 472 aaKnown RBP23.05■■□□□ 1.28
SS18-208ENST00000577751 CTU1Q7Z7A3 348 aaKnown RBP23.05■■□□□ 1.28
SS18-208ENST00000577751 SIAH1Q8IUQ4 282 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 ACER1Q8TDN7 264 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 CCDC136Q96JN2 1154 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 C12orf42Q96LP6 360 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 DIAPH3Q9NSV4 1193 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 TMOD4Q9NZQ9 345 aa23.05■■□□□ 1.28
SS18-208ENST00000577751 HOXA7P31268 230 aaPredicted RBP23.04■■□□□ 1.28
SS18-208ENST00000577751 MFAP1P55081 439 aaKnown RBP23.04■■□□□ 1.28
SS18-208ENST00000577751 ERO1AQ96HE7 468 aa23.04■■□□□ 1.28
SS18-208ENST00000577751 MKNK2Q9HBH9 465 aa23.04■■□□□ 1.28
SS18-208ENST00000577751 A0A1W2PRG0 241 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 FGAP02671 866 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 USP14P54578 494 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 PABPC4Q13310 644 aaKnown RBP eCLIP23.03■■□□□ 1.28
SS18-208ENST00000577751 STK11IPQ8N1F8 1099 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.03■■□□□ 1.28
SS18-208ENST00000577751 ZNF287Q9HBT7 754 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 CPA4Q9UI42 421 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 ANAPC4Q9UJX5 808 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 PNMA3Q9UL41 463 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 ZMYM6O95789 1325 aa23.03■■□□□ 1.28
SS18-208ENST00000577751 BCRP11274 1271 aa23.02■■□□□ 1.28
SS18-208ENST00000577751 CAP1Q01518 475 aa23.02■■□□□ 1.28
SS18-208ENST00000577751 CD99L2Q8TCZ2 262 aa23.02■■□□□ 1.28
SS18-208ENST00000577751 MCOLN1Q9GZU1 580 aa23.02■■□□□ 1.28
SS18-208ENST00000577751 SLC3A2P08195 630 aaKnown RBP23.01■■□□□ 1.27
SS18-208ENST00000577751 FEZ1Q99689 392 aa23.01■■□□□ 1.27
SS18-208ENST00000577751 KANSL2Q9H9L4 492 aa23.01■■□□□ 1.27
SS18-208ENST00000577751 OSBPP22059 807 aa23■■□□□ 1.27
SS18-208ENST00000577751 LACTBP83111 547 aaPredicted RBP23■■□□□ 1.27
SS18-208ENST00000577751 ICA1Q05084 483 aa23■■□□□ 1.27
SS18-208ENST00000577751 PDE4BQ07343 736 aa23■■□□□ 1.27
SS18-208ENST00000577751 ZYXQ15942 572 aaKnown RBP23■■□□□ 1.27
SS18-208ENST00000577751 PKN2Q16513 984 aaKnown RBP23■■□□□ 1.27
SS18-208ENST00000577751 ERICH6BQ5W0A0 696 aa23■■□□□ 1.27
SS18-208ENST00000577751 CLEC10AQ8IUN9 316 aa23■■□□□ 1.27
SS18-208ENST00000577751 ZNF444Q8N0Y2 327 aaPredicted RBP23■■□□□ 1.27
SS18-208ENST00000577751 ASCC2Q9H1I8 757 aaPredicted RBP23■■□□□ 1.27
SS18-208ENST00000577751 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23■■□□□ 1.27
SS18-208ENST00000577751 TMX2Q9Y320 296 aa23■■□□□ 1.27
SS18-208ENST00000577751 PRDM1O75626 825 aa22.99■■□□□ 1.27
SS18-208ENST00000577751 CHMLP26374 656 aa22.99■■□□□ 1.27
SS18-208ENST00000577751 SKAP1Q86WV1 359 aa22.99■■□□□ 1.27
SS18-208ENST00000577751 SMCR8Q8TEV9 937 aaPredicted RBP22.99■■□□□ 1.27
SS18-208ENST00000577751 IL25Q9H293 177 aa22.99■■□□□ 1.27
SS18-208ENST00000577751 ARHGEF10LQ9HCE6 1279 aa22.99■■□□□ 1.27
SS18-208ENST00000577751 IGKV6D-41A0A0C4DH26 115 aa22.98■■□□□ 1.27
SS18-208ENST00000577751 FGRP09769 529 aa22.98■■□□□ 1.27
SS18-208ENST00000577751 CTDSPL2Q05D32 466 aa22.98■■□□□ 1.27
SS18-208ENST00000577751 OTOP1Q7RTM1 612 aa22.98■■□□□ 1.27
SS18-208ENST00000577751 TACC3Q9Y6A5 838 aa22.98■■□□□ 1.27
SS18-208ENST00000577751 ZSWIM8A7E2V4 1837 aa22.97■■□□□ 1.27
SS18-208ENST00000577751 EEF2P13639 858 aaKnown RBP22.97■■□□□ 1.27
SS18-208ENST00000577751 VCAM1P19320 739 aa22.97■■□□□ 1.27
SS18-208ENST00000577751 GCLCP48506 637 aaPredicted RBP22.97■■□□□ 1.27
SS18-208ENST00000577751 P2RX7Q99572 595 aaKnown RBP22.97■■□□□ 1.27
SS18-208ENST00000577751 SH2D4AQ9H788 454 aa22.97■■□□□ 1.27
SS18-208ENST00000577751 TRIM17Q9Y577 477 aa22.97■■□□□ 1.27
SS18-208ENST00000577751 USP17L15C9J2P7 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L13C9JLJ4 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L11C9JVI0 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L18D6R9N7 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L22D6RA61 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L17D6RBQ6 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L19D6RCP7 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L20D6RJB6 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 CTGFP29279 349 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 IRX3P78415 501 aaPredicted RBP22.96■■□□□ 1.27
SS18-208ENST00000577751 USP17L24Q0WX57 530 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 ARHGEF6Q15052 776 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 CATSPERGQ6ZRH7 1159 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 NEDD1Q8NHV4 660 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 ABHD8Q96I13 439 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 DSCC1Q9BVC3 393 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 ARHGAP39Q9C0H5 1083 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 EFCC1Q9HA90 598 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 INCENPQ9NQS7 918 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 NYAP2Q9P242 653 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 RAD50Q92878 1312 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 PLIN4Q96Q06 1357 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 MGAMO43451 1857 aa22.96■■□□□ 1.27
SS18-208ENST00000577751 ORC4O43929 436 aa22.95■■□□□ 1.26
SS18-208ENST00000577751 KIF22Q14807 665 aa22.95■■□□□ 1.26
SS18-208ENST00000577751 KIAA1755Q5JYT7 1200 aa22.95■■□□□ 1.26
SS18-208ENST00000577751 FBXO46Q6PJ61 603 aaPredicted RBP22.95■■□□□ 1.26
SS18-208ENST00000577751 RUFY2Q8WXA3 655 aa22.95■■□□□ 1.26
SS18-208ENST00000577751 LPAR1Q92633 364 aa22.95■■□□□ 1.26
SS18-208ENST00000577751 VCPKMTQ9H867 229 aa22.95■■□□□ 1.26
SS18-208ENST00000577751 LAMA4Q16363 1823 aa22.94■■□□□ 1.26
SS18-208ENST00000577751 HERVK_113P62684 666 aa22.94■■□□□ 1.26
SS18-208ENST00000577751 TFAP4Q01664 338 aa22.94■■□□□ 1.26
SS18-208ENST00000577751 FAM110CQ1W6H9 321 aa22.94■■□□□ 1.26
SS18-208ENST00000577751 BMP2KLQ5H9B9 411 aa22.94■■□□□ 1.26
SS18-208ENST00000577751 ANKRD13CQ8N6S4 541 aa22.94■■□□□ 1.26
SS18-208ENST00000577751 NBPF3Q9H094 633 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms